/synthstrip

Synthstrip integration to be used across nipreps

Primary LanguagePythonApache License 2.0Apache-2.0

SynthStrip

This is a NiPreps implementation of the SynthStrip skull-stripping tool.

Installation

# To install the base package
pip install nipreps-synthstrip

# For the nipype interface
pip install nipreps-synthstrip[nipype]

# For the pydra interface
pip install nipreps-synthstrip[pydra]

Command Line Tool

$ nipreps-synthstrip

Nipype Interface

from nipreps.synthstrip.wrappers.nipype import SynthStrip

Pydra Interface

from nipreps.synthstrip.wrappers.pydra import SynthStrip

Citation

A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. SynthStrip: Skull-Stripping for Any Brain Image. https://arxiv.org/abs/2203.09974