Pinned Repositories
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
eddymotion
Open-source eddy-current and head-motion correction for dMRI.
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
fmriprep-notebooks
A repository for notebooks associated with FMRIPREP
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
nibabies
fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI
nirodents
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
NeuroImaging PREProcessing toolS's Repositories
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
nipreps/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
nipreps/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
nipreps/nibabies
fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI
nipreps/eddymotion
Open-source eddy-current and head-motion correction for dMRI.
nipreps/nirodents
nipreps/nipreps-book
nipreps/fmripost-aroma
Run ICA-AROMA on fMRIPrep derivatives
nipreps/nireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
nipreps/mriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).
nipreps/fmriprep_stats
Automatic reports summarizing usage stats from Sentry.io
nipreps/qkay
Manager for the quality assessment of large neuroimaging studies
nipreps/synthstrip
Synthstrip integration to be used across nipreps
nipreps/migas-server
nipreps/nipreps.github.io
The NiPreps landing page
nipreps/.github
Shared community health files
nipreps/migas-py
A ready-to-go python package for communicating with a migas server
nipreps/version-schemes
setuptools_scm plugin for nipreps version schemes
nipreps/fmripost-phase
An attempt at an fMRIPost workflow for handling phase data
nipreps/fmripost-rapidtide
A BIDS App for running rapidtide on a preprocessed fMRI dataset.
nipreps/resampler
Single-shot resampling utility for nipreps derivatives
nipreps/skeleton
A generic project skeleton for Python projects.
nipreps/202405-sprint
Nipreps sprint, Cambridge, MA, May 15-17, 2024
nipreps/acres
Data-loading utility for Python
nipreps/fmripost-template
A generic fMRIPost workflow
nipreps/gradunwarp
fork of HCP gradunwarp tool for Gradient Unwarping in Python
nipreps/niprepspype
Ni[Preps]Pype: Workflows and interfaces for neuroimaging packages -- adaptation of NiPype to NiPreps