NeuroImaging PREProcessing toolS

Pinned Repositories

dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language:Python67 12 8625
eddymotion
Open-source eddy-current and head-motion correction for dMRI.
Language:Python17 9 5216
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language:HTML663 27 1.9k299
fmriprep-notebooks
A repository for notebooks associated with FMRIPREP
Language:Jupyter Notebook17 17 02
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Language:Python316 15 700133
nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
Language:Python28 8 16311
nirodents
Language:Python13 9 233
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
Language:Python94 16 23852
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
Language:Python34 10 17027
smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Language:Python139 13 18541

NeuroImaging PREProcessing toolS's Repositories

nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language:Python67 12 8625
nipreps/fmriprep-notebooks
A repository for notebooks associated with FMRIPREP
Language:Jupyter Notebook17 17 02
nipreps/fmriprep-rodents
fMRIPrep for Rodents
Language:HTML12 7 217
nipreps/qc-book
ISMRM '22 QC Tutorial
Language:Dockerfile10 6 06
nipreps/sops-cookiecutter
Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)
Language:Jinja9 3 108
nipreps/dmriprep-viewer
Interactive dmriprep report HTML, JS & CSS
Language:Vue8 8 286
nipreps/nipreps-book
Language:Dockerfile8 5 106
nipreps/mriqcwebapi
Language:Python7 6 2313
nipreps/nondefaced-detector
Identify non-defaced datasets before publication
Language:Python6 11 81
nipreps/mriqc-notebooks
A repository associated to MRIQC containing notebooks and other resources
Language:Jupyter Notebook4 7 01
nipreps/GOVERNANCE
The NiPreps Community's Governance Documents
Language:Python2 2 122
nipreps/petprep
PETPrep: A Robust Preprocessing Pipeline for PET Data
Language:Python2 5 1
nipreps/petqc
PETQC: image quality metrics for quality assessment of PET data
2 4 0
nipreps/TM-meetings
2
nipreps/generalizable-brain-extraction
Generalizing antsBrainExtraction across populations and species
Language:Python1 4 01
nipreps/micro-nipype
Workflows and interfaces for neuroimaging packages
1
nipreps/mriqcwebapi-schemas
Schemas for the MRIQC WebAPI
Language:Python1
nipreps/nipreps
The official NiPreps Python module
Language:Shell1 3 1
nipreps/resampler
Single-shot resampling utility for nipreps derivatives
Language:Python1 1 12
nipreps/skeleton
A generic project skeleton for Python projects.
1 1 0
nipreps/202405-sprint
Nipreps sprint, Cambridge, MA, May 15-17, 2024
3 01
nipreps/Cookiecutter
Template for NiPreps repositories
3 2
nipreps/molprep
MolPrep is a robust and easy-to-use pipeline for preprocessing of diverse molecular imaging data (PET, SPECT). The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
1 0
nipreps/molQC
Automated Quality Control and visual reports for Quality Assessment of molecular brain imaging (PET, SPECT)
2 0