nipreps/niworkflows

Issues

• `dim` attribute in `References` is incorrect for non-Freesurfer surfaces

  #882 opened 2 months ago by tsalo
  0

• Data loader fails with NiWorkflows installed in editable mode

  #884 opened 2 months ago by oesteban
  2

• Distinguish between surface and volume spaces in `Reference`

  #881 opened 2 months ago by tsalo
  3

• Set cal_max properly in ``IntensityClip``

  #877 opened 3 months ago by oesteban
  0

• mriqc not installed as dependency

  #875 opened 3 months ago by sjshim
  4

• CI: AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'

  #865 opened 5 months ago by DimitriPapadopoulos
  0

• `niworkflows.utils.bids.collect_data` should drop unnecessary filters

  #862 opened 6 months ago by oesteban
  0

• Handle file read/write race in parallel computing

  #856 opened 7 months ago by psychelzh
  3

• Migrate tools from fMRIPrep (post-fit-apply restructure) to Niworkflows

  #854 opened 8 months ago by tsalo
  0

• Add ASL support

  #838 opened 10 months ago by tsalo
  0

• Mapping between MNI152NLin6Asym ijk-coordinates and CIFTI row indices differs from HCP

  #814 opened a year ago by madisoth
  6

• ENH: Add PET to collect_data

  #822 opened a year ago by mnoergaard
  0

• Intersphinx mapping is mistargeting URLs

  #768 opened 2 years ago by effigies
  0

• High likelihood of filesystem race in BIDSFreeSurferDir

  #804 opened a year ago by effigies
  0

• Pandoc failures can lead to report failures

  #799 opened a year ago by effigies
  0

• Pre-run freesurfer folder needs to be writable ?

  #794 opened a year ago by ins0mniac2
  9

• installation error on macOS 13 with homebrew python 3.11

  #790 opened 2 years ago by raamana
  6

• ``ReadSidecarJSON`` always indexes the layout (or breaks)

  #786 opened 2 years ago by oesteban
  0

• Finalize the migration of visual elements to NiReports

  #787 opened 2 years ago by oesteban
  0

• DerivativesDataSink datatype coercion does not skip non-dtseries CIFTIs

  #778 opened 2 years ago by tsalo
  2

• DerivativesDataSink does not extract entities from custom configuration

  #776 opened 2 years ago by tsalo
  3

• Allow custom configurations in DerivativesDataSink

  #757 opened 2 years ago by tsalo
  2

• Duplicated BinaryDilation interface (in morphology and nibabel)

  #708 opened 2 years ago by oesteban
  2

• Missing metadata for `res` and `den` outputs

  #752 opened 2 years ago by rwblair
  1

• Non-compliant CIFTI sidecar fields clashing with entities

  #755 opened 2 years ago by effigies
  4

• Latest version of traits (6.4.1) seems to break init_brain_extraction_wf

  #740 opened 2 years ago by ellisdg
  2

• Unit test broken

  #742 opened 2 years ago by oesteban
  8

• Improve robustness of brain extraction pipeline

  #734 opened 2 years ago by jrdalenberg
  8

• [ENH] Datasinking MRTrix3's gradient files

  #723 opened 2 years ago by GalKepler
  0

• Remove distutils from code

  #722 opened 2 years ago by mgxd
  0

• [BUG] Initializing a "nested" workflow result in reuse of pre-initialized one.

  #700 opened 2 years ago by GalKepler
  7

• CI failing [`get_data`]

  #710 opened 2 years ago by mgxd
  3

• [ENH] Add PET query to collect_data in utils

  #709 opened 2 years ago by mnoergaard
  2

• Add `test_masks` back into CI

  #671 opened 3 years ago by mgxd
  1

• TypeError: unlink() got an unexpected keyword argument 'missing_ok'

  #694 opened 2 years ago by eilidhmacnicol
  4

• Update atime when copying FreeSurfer

  #702 opened 2 years ago by effigies
  0

• [ENH] Default path patterns for DWI preprocessing outputs

  #698 opened 3 years ago by GalKepler
  0

• Excessive padding when resampling zooms

  #696 opened 3 years ago by mgxd
  3

• Add figure to facilitate CIFTI visualization

  #662 opened 3 years ago by mgxd
  4

• Try CircleCI's docker layer caching

  #672 opened 3 years ago by oesteban
  0

• Matplotlib constraint

  #667 opened 3 years ago by effigies
  2

• Overhaul of the carpet plots

  #665 opened 3 years ago by oesteban
  1

• Ease installation version restrictions

  #661 opened 3 years ago by mgxd
  0

• Multiversion documentation chooser fails when the HEAD of master is a tag commit

  #660 opened 3 years ago by oesteban
  0

• Okay to squash the streak of commits I've pushed to master?

  #659 opened 3 years ago by oesteban
  1

• Detailed brain extraction reports

  #648 opened 3 years ago by effigies
  2

• Conclude integration of utilities in the brain extraction workflow

  #644 opened 3 years ago by oesteban
  0

• DerivativesDatasink corrupting files and bus error

  #639 opened 3 years ago by fmorfini
  12

• DerivativesDataSink not preventing gzip mtime from being set, leading to non-deterministic file checksums

  #640 opened 3 years ago by effigies
  2

• ValueError while building path

  #642 opened 3 years ago by mfschmidt
  2