nirwan1265
Currently working towards my PhD Functional Genomics and Bioinformatics
North Carolina State University
Pinned Repositories
alphafold
Open source code for AlphaFold.
BZea_Introgression_Finder
Find your BZea lines for your favourite gene.
BZea_kmergwas
Clayton_2023
This repository is for the phenotypes planted in Clayton, NC, but the Alvarez lab.
COMP_GWAS
Easy combination of SNP pvalues from GWAS data using GBJ package
conda_r_skeleton_helper
Cleaning up Conda r-packages
CSC-530-Proposal--Motif-Evolution
harvester
Combine candidate evidence from multiple sources
metashape
Workflow for Metashape
shiny.kernel
nirwan1265's Repositories
nirwan1265/harvester
Combine candidate evidence from multiple sources
nirwan1265/BZea_Introgression_Finder
Find your BZea lines for your favourite gene.
nirwan1265/BZea_kmergwas
nirwan1265/Clayton_2023
This repository is for the phenotypes planted in Clayton, NC, but the Alvarez lab.
nirwan1265/COMP_GWAS
Easy combination of SNP pvalues from GWAS data using GBJ package
nirwan1265/conda_r_skeleton_helper
Cleaning up Conda r-packages
nirwan1265/CSC-530-Proposal--Motif-Evolution
nirwan1265/ggBLUP
genomic prediction for gwas using SNPs and phenotype
nirwan1265/metashape
Workflow for Metashape
nirwan1265/Diplo_introgression
This repository holds the introgression analysis pipeline and results for diploperennis.
nirwan1265/Docker-Hazel-NCSU
A work space for running a Docker Image
nirwan1265/GWAS_tutorial
R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
nirwan1265/HiLo_Lipid
This github page outlines the prediction algorithm for HiLo lipids.
nirwan1265/Illumina_PacBio_Hybrid
This github page defines the workflow for the joint analysis for Illumina and PacBio sequences
nirwan1265/Image-Segmentation
Image Segmentation using SAM and openCV
nirwan1265/Introgression_Map
nirwan1265/Mapping
nirwan1265/MSDIAL-tutorial
A workflow for MSDIAL
nirwan1265/nirwan1265
Config files for my GitHub profile.
nirwan1265/Parallelizing
R code for parallelizing scripts to run on multiple cores
nirwan1265/Phentype-Prediction-using-ML-DL
This github page is intended to serve as a repository for a Machine Learning for Phenotype Prediction
nirwan1265/PHG_ZeaGEA_kmer_GWAS
This repository exists to act as a reference for running the pipeline for running kmer-based GWAS for PHG imputed ZeaGEA accessions.
nirwan1265/Phosphorus_prediction
nirwan1265/Phosphorus_RNAseq
A repo containing working details for RNAseq analysis and its Gene Regulatory Network
nirwan1265/RNA_seq_analysis
Pipeline for describing RNAseq analysis
nirwan1265/SAP_lipids_GWAS
Sorghum Association Panel Lipid analysis in low Phosphorus
nirwan1265/Semi-Global-Alignment-Bioinformatics-Course
Semi-global Alignment
nirwan1265/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
nirwan1265/The-Other-Side-of-Global-Warming--A-Sorghum-Study
nirwan1265/Zea_lipid