/Phentype-Prediction-using-ML-DL

This github page is intended to serve as a repository for a Machine Learning for Phenotype Prediction

Primary LanguageRMIT LicenseMIT

About the data

SNP data from maize genotypes that are a part of SEED panel. 1.5 mil SNPs in total.

Feature selection

Different feature selection methods are tested
1.) MultiSurf
2.) GWAS selection

Prediction models that are tested

1.) rrBLUP
2.) CNN
3.) DNN
4.) RNN
5.) DNN+RNN