noamteyssier
Bioinformatics at the intersection of systems biology, machine learning, and functional genomics in neurodegenerative disease
Arc InstituteSan Francisco, California
Pinned Repositories
adpbulk
pseudobulking on an AnnData object
bedrs
bedtools-like functionality for interval sets in rust
crispr_screen
Efficient Differential Expression and Gene Aggregation for CRISPR screens.
geomux
hypergeometric testing of guide RNA identity to assign cell barcodes to a guide identity
ggetrs
Efficient querying of biological databases
gia
gia: Genomic Interval Arithmetic
ibu
a rust library for high throughput binary encoding of genomic sequences
idea
Integrated Differential Expression and Annotation
pipspeak
a CLI tool to whitelist filter pipseq reads and convert them to a 10X-style format
sgcount
A flexible and fast sgRNA counter from FASTQ Files
noamteyssier's Repositories
noamteyssier/qgpu
A simple job scheduler across multi-node gpus
noamteyssier/art_or_trash
is it art? or is it trash?
noamteyssier/ama1
collection of scripts related to PFAMA1
noamteyssier/binftools
noamteyssier/casgen
Generates cas12 6-plex reads
noamteyssier/ClusterDock
Pipeline and analysis scripts for k-mean based clustering of DOCK
noamteyssier/fxread_benchmark
simple benchmark for usage for fxread, fastq, and bio-rs
noamteyssier/hgsig
Differential Representation Analysis
noamteyssier/MCD-MotifSearch
Linking amino acid sequences with kmer overlap into an undirected network
noamteyssier/mol2grep
a simple grep tool for mol2 formatted files written in rust
noamteyssier/PhageLoader
A pipeline to load in and process phage count data via z-score enrichment between two groups.
noamteyssier/PhIP-Seq_TororoKanungu
Repository for analyses related to Tororo-Kanungu Phage Display Assay
noamteyssier/polars_pandas_benchmark
benchmarking some of my common utils in pandas and comparing both syntax and speed with polars
noamteyssier/rust-bwa
Rust wrapper of the BWA C API
noamteyssier/rust-debruijn
De Bruijn graphs in Rust
noamteyssier/StringBuilder
A python wrapper for string-db API
noamteyssier/wgs
whole genome sequencing method comparison