Pinned Repositories
Accessory.Crispr
Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
ADTGP
Normalize single-cell antibody sequencing data using Gaussian Process Regression
book
CHM13
The complete sequence of a human genome
cpython
The Python programming language
CRISPRdisco
CRISPR discovery pipeline
ggGate
Point-and-click gating on a ggplot2 object through shiny
IDH_Tapestri
All code used in manuscript
tapestri
analyze tapestri multiomics data
tapestri.tools
A toolbox for the analysis of tapestri single cell multi-omics data
northNomad's Repositories
northNomad/ggGate
Point-and-click gating on a ggplot2 object through shiny
northNomad/tapestri
analyze tapestri multiomics data
northNomad/Accessory.Crispr
Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
northNomad/ADTGP
Normalize single-cell antibody sequencing data using Gaussian Process Regression
northNomad/book
northNomad/CHM13
The complete sequence of a human genome
northNomad/cpython
The Python programming language
northNomad/CRISPRdisco
CRISPR discovery pipeline
northNomad/CRISPRscreen
Light weight Shiny app to interactively analyze CRISPR screen result from the mutant IDH1 project.
northNomad/IDH_Tapestri
All code used in manuscript
northNomad/sgFindR
Script to order sgRNAs that target -input <.fasta> from IDT
northNomad/tapestri.tools
A toolbox for the analysis of tapestri single cell multi-omics data
northNomad/cyto_plot.Troubleshoot
A case where 'stats' in 1D & 2D cyto_plots give different values.
northNomad/CytoExploreR_archive
Interactive Cytometry Data Analysis
northNomad/drawCell
R package to create cell pictures.
northNomad/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
northNomad/Fantasy-Football-Models
Beating the shit out of my friends with data science
northNomad/gallery
Gallery of ggplot2 extensions
northNomad/generativeArt
northNomad/knowledgebase
recipes that save time
northNomad/MDAnderson_IDH_patient_data
northNomad/mixedPDX_manuscript
northNomad/protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
northNomad/rethinking
Statistical Rethinking course and book package
northNomad/rms
Regression Modeling Strategies
northNomad/Sanity
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
northNomad/SCITE
northNomad/SIMLR
Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207
northNomad/Torsten
library of C++ functions that support applications of Stan in Pharmacometrics
northNomad/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms