noscode

noscode's Stars

• avaughn271/AdmixtureBayes

  Language:Python171

• jthlab/momi3

  Language:Python4

• bodkan/demografr

  Fast and simple simulation-based population genetic inference in R

  Language:R261

• bodkan/slendr

  Population genetic simulations in R 🌍

  Language:R545

• geometric-kernels/GeometricKernels

  Geometric kernels on manifolds, meshes and graphs

  Language:Python21318

• lisosoma/ML-for-demographic-inference

  Application of machine learning methods for approximate prediction of demographic history parameters by the allele-frequency spectrum

  Language:Jupyter Notebook4

• z0on/AFS-analysis-with-moments

  Standalone python scripts to do pairwise AFS analysis for population differentiation using Moments (http://www.genetics.org/content/early/2017/05/08/genetics.117.200493)

  Language:Python64

• steinrue/two_locus_selection_moments

  Two-locus selection moments (scripts to create figures in manuscript)

  Language:Python21

• steinrue/chimp

  CHMM History-Inference ML Procedure - Infers population size histories from genomic data

  Language:Python5

• tskit-dev/msprime

  Simulate genealogical trees and genomic sequence data using population genetic models

  Language:Python17284

• automl/SMAC3

  SMAC3: A Versatile Bayesian Optimization Package for Hyperparameter Optimization

  Language:Python1.1k220

• Captain-Blackstone/wright_fisher_vs_moran

  Here are all the materials on our first semester project.

  Language:Forth2

• harrispopgen/mushi

  [mu]tation [s]pectrum [h]istory [i]nference

  Language:Python245

• spbu-math-cs/Graph-Gaussian-Processes

  Supplementary code for the AISTATS 2021 paper "Matern Gaussian Processes on Graphs".

  Language:Python519

• ctlab/GADMA

  Genetic Algorithm for Demographic Model Analysis

  Language:Python4614

• aterenin/SparseGaussianProcesses.jl

  A Julia implementation of sparse Gaussian processes via path-wise doubly stochastic variational inference.

  Language:Julia333

• j-wilson/GPflowSampling

  Code for efficiently sampling functions from GP(flow) posteriors

  Language:Python6516

• pblischak/inbreeding-sfs

  SFS-Based Demographic Inference with Inbreeding

  Language:Forth1

• SheffieldML/GPyOpt

  Gaussian Process Optimization using GPy

  Language:Jupyter Notebook927261

• spbu-math-cs/Riemannian-Gaussian-Processes

  Supplementary code for the NeurIPS 2020 paper "Matern Gaussian processes on Riemannian manifolds".

  Language:Python267

• isaacovercast/easySFS

  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

  Language:Python12423

• Paul1298/Diploma

  Bayesian optimization for the derivation of the demographic population history

  Language:Jupyter Notebook1

• popgenmethods/momi2

  Infer demographic history with the Moran model

  Language:Python4711

• dportik/dadi_pipeline

  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.

  Language:Python6330