novoalab/nanoRMS

Issues

• Errors when building with docker

  #39 opened 10 months ago by asystech-chen
  1

• epinano_rms.py -> OverflowError: Python int too large to convert to C long

  #40 opened 10 months ago by DelphIONe
  3

• How to make files like RNA_Mod_Positions_rRNAYeast.tsv in other species

  #38 opened 2 years ago by ShelaLJJ
  2

• modpos

  #33 opened 2 years ago by vetmohit89
  7

• Ouput from Pseudou_prediction_pairedcondition_transcript.R

  #37 opened 2 years ago by vetmohit89
  4

• modpos file missing

  #32 opened 2 years ago by Tanujgn
  6

• Epinano-RMS

  #35 opened 2 years ago by vetmohit89
  1

• CSV file for human transcriptome

  #36 opened 2 years ago by vetmohit89
  2

• Move and trace files

  #34 opened 2 years ago by vetmohit89
  3

• RNA modification stoichiometry estimation using Tombo resquiggling

  #12 opened 4 years ago by pabloacera
  2

• psU Prediction

  #16 opened 2 years ago by AminaLEM
  6

• Writing csv from epinano_rms.py takes a long time

  #31 opened 2 years ago by itslittman
  0

• ValueError: Columns must be same length as key

  #24 opened 3 years ago by ssscj
  7

• Problem with epinano_rms.py

  #30 opened 2 years ago by twocata
  1

• what are the meaning of Guppy output fast5 files's trace and move dataset?

  #28 opened 3 years ago by Cynthia0411
  1

• per_read/get_freq.py: The error message says "[ERROR] -m/--mincov must be at least 5!", but the check is for at least 10.

  #29 opened 3 years ago by mnrusimh
  1

• Error occured durin epinano_rms.py command

  #15 opened 3 years ago by aman21392
  1

• FileNotFoundError: [Errno 2] No such file or directory

  #22 opened 3 years ago by yuxinPenny
  2

• Error in Running Epinano-RMS

  #25 opened 3 years ago by septav
  2

• Create sequence dictionary

  #26 opened 3 years ago by nagarkarsanket
  1

• Object mask error

  #23 opened 3 years ago by yuxinPenny
  4

• TypeError: write() takes exactly one argument (2 given)

  #14 opened 3 years ago by ronicaa
  8

• modification stoichiometry estimation using Nanopolish resquiggling

  #9 opened 3 years ago by pabloacera
  1

• Error in get_trace_for_reference_bases while running get_features.py

  #27 opened 3 years ago by mnrusimh
  2

• About the directionality of the stoichiometry change

  #21 opened 3 years ago by Renown-TAL
  7

• Nothing output after running a day

  #10 opened 3 years ago by Renown-TAL
  1

• Nothing output to bam file when running step 3. RNA modification stoichiometry estimation using Tombo resquiggling

  #18 opened 3 years ago by Renown-TAL
  0

• Nothing output in bam file when running step 3. RNA modification stoichiometry estimation using Tombo resquiggling

  #17 opened 3 years ago by Renown-TAL
  0

• code in get_features.py

  #13 opened 3 years ago by zhongzhendong
  1

• per_reads/get_freq.py show constant high KNN value through all positions

  #8 opened 3 years ago by hanliaoucla
  3

• About mkae a RNA_Mod_Positions file

  #11 opened 4 years ago by Renown-TAL
  4

• ggplot error

  #1 opened 4 years ago by soniacruciani
  0

• Extra period in .{}.done_splitting?

  #6 opened 4 years ago by eoziolor
  5

• get_features.py: cannot convert float NAN to integer

  #7 opened 4 years ago by hanliaoucla
  1

• mod file missing from Pseudou_prediction_singlecondition.R

  #5 opened 4 years ago by eoziolor
  4

• Syntax error in epinano_rms.py

  #4 opened 4 years ago by eoziolor
  0

• getting error at "RNA modification stoichiometry estimation using Tombo resquiggling"

  #3 opened 4 years ago by septav
  4