Pinned Repositories
3D-CMCC-FEM
3D-CMCC-FEM code
AdvancedHMC.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
AlloCarbStan-open
Bayesian mixing model with two trophic levels, executed with Stan and R
awesome-R
A curated list of awesome R frameworks, packages and software.
BACI-TWI
BACI type analysis of Tree-ring index
BASFOR
The BASic FORest model, BASFOR, is a process-based model for forest biogeochemistry which simulates the C-, N- and water-cycles.
BayesianOptimization
A Python implementation of global optimization with gaussian processes.
BayesianOptimization.jl
Bayesian optimization for Julia
Master-Thesis
Interacting Particel RBF solver for PDEs arising from Markov Chain Monte Carlo simulations
Soil-Organic-Carbon-Model
npp97's Repositories
npp97/Soil-Organic-Carbon-Model
npp97/Biome-BGC
Biome-BGC ecophysiological model
npp97/blenditbayes
Code used in my blog "Blend it like a Bayesian!"
npp97/eco-centennial-paper
Manuscript for Ecology centennial paper
npp97/ED2-1
Ecosystem Demography Model
npp97/emcee
The Python ensemble sampling toolkit for affine-invariant MCMC
npp97/FitFarquharModel
Fitting routine for the Farquhar model parameters to a series of measured A-Ci curve data
npp97/GDAY
G'DAY simulates carbon, nitrogen & water dynamics on a daily time step.
npp97/GrowthRespiration
npp97/IMB-SizeDependent
Library to simulate IBM with size dependent growth rate and asymetric competition.
npp97/landsat_preprocess
IPython notebook documenting a workflow for preprocessing Landsat data
npp97/Liu_reanalysis
Analysis of Liu et al paper in Global Ecology and Biogeography
npp97/met2cf.NARR
Download, format, subset
npp97/meteR
an r package for use with the maximum entropy theory of ecology
npp97/model_isotope
Supplementary material for the paper: Stable oxygen isotope signatures of early season wood in Agathis Australis (*Kauri*) tree-ring earlywood: Preliminary results and prospects for palaeoclimate reconstructions. Lorrey at al. 2014, submitted to JGR: Biogeosciences
npp97/NESoilC
to estimate soil carbon storage using AGE
npp97/ParamDB
Database and Python API for managing ecohydrology parameters used by RHESSys
npp97/PAWL
Implementation of the PAWL algorithm
npp97/pecan
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
npp97/pestpp
PEST++ inverse model project
npp97/PhenologyForecast
npp97/pNUK73
A Metropolis-Hastings MCMC implementation that fits a simple Monod model to a bacterial growth curve
npp97/pymc
PyMC version 3 (PyMC 2 is in branch 2.3)
npp97/R
R script for LPJ model
npp97/Rest_sp_mod
Spatial modelling of restoration priorities in tropical forests
npp97/RHESSys
The Regional Hydro-Ecologic Simulation System
npp97/rwtocore
Rwtocore: convert tree-ring measurements to drawings of cores
npp97/spatial_correction_lavaan
A method to alter standard errors from spatial autocorrelation using lavaan and ape
npp97/TRADER
Tree Ring Analysis of Disturbance Events in R
npp97/ULM
Unified Land Model