Pinned Repositories
abberior-files
arrows
ImageJ / Fiji java code for easily controllable overlay directional arrows
bUnwarpJ
ImageJ/Fiji plugin for consistent elastic registration of 2D images
chroma
A generative model for programmable protein design
cmdstanpy
CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
cv_resume
Thoughts on how to make a CV in latex, how to auto create Resumes with different options, and keep formatting friendly for recrruitment and careers sites.
FCS-Time-Symmetric-Analysis
Contains original Igor Pro code from Ishii & Tahara, Optics Express 2015, of the beautifully elegant time symmetric correlation function that removes after pulsing, together with my Matlab port.
OpenVDB-Getting-Started
SPIM-Matlab-Destripe-Deshake
Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms
visum
Laser scanning microscope control GUI. Controls NI hardware cards for image acquisitions including timelapse, zstacks, stitching and saves to a custom bolstered tif format.
nranthony's Repositories
nranthony/visum
Laser scanning microscope control GUI. Controls NI hardware cards for image acquisitions including timelapse, zstacks, stitching and saves to a custom bolstered tif format.
nranthony/OpenVDB-Getting-Started
nranthony/SPIM-Matlab-Destripe-Deshake
Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms
nranthony/abberior-files
nranthony/arrows
ImageJ / Fiji java code for easily controllable overlay directional arrows
nranthony/bUnwarpJ
ImageJ/Fiji plugin for consistent elastic registration of 2D images
nranthony/chroma
A generative model for programmable protein design
nranthony/cmdstanpy
CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
nranthony/cv_resume
Thoughts on how to make a CV in latex, how to auto create Resumes with different options, and keep formatting friendly for recrruitment and careers sites.
nranthony/FCS-Time-Symmetric-Analysis
Contains original Igor Pro code from Ishii & Tahara, Optics Express 2015, of the beautifully elegant time symmetric correlation function that removes after pulsing, together with my Matlab port.
nranthony/gitignore
A collection of useful .gitignore templates
nranthony/ilastik
ilastik-shell, applets, and workflows to string them together.
nranthony/jupyter-intro-xfel-jan17
Introduction to Jupyter Notebook
nranthony/NanoStringNCTools
Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
nranthony/nranthony
me
nranthony/graph_arxiv
Graph neural networks API interface pointing at Arxiv
nranthony/hamiltonian-nn
Code for our paper "Hamiltonian Neural Networks"
nranthony/NanostringNormalization
nranthony/nuc_ctDNA_process
ImageJ 1.x macros and Matlab code for processing 3D nuclear classification and quantification
nranthony/open-abberior-files
ImageJ plugin to open Abberior obf and msr files, providing a neater, more collated, channel handling.
nranthony/RFdiffusion
Modifications to PyTorch to update to CUDA 11.8 for H100 compatibility
nranthony/sFCS-Analysis
nranthony/spim-create-xml-dataset
Fiji / ImageJ Plugin for generating BigDataViewer / BigStitcher .xml dataset files that contain rotated and translated stack metadata for easy fusing.
nranthony/tif2blender
Loading and handling microscopy data in blender
nranthony/tiff_process
basic input, process, output of tiff files using arrayfire to do the hardwork
nranthony/TTTR
Upgraded code options for Pico Quant Time Tagged Time Resolved (TTTR) data. Main focus will be on .ptu files.
nranthony/volumina
Volume Slicing and Editing