nsalomonis
Our laboratory works to develop computational genomics methods for to understand cellular heterogeneity at the level of gene expression and splicing.
Cincinnati Children's Hospital and Medical Research CenterCincinnati, Ohio
Pinned Repositories
altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
BAM-to-Junction-BED
Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates
Human-Bone-Marrow-Titration-Atlas
An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas
kallisto-splice
Modification of kallisto 0.43.1 for identifying splice junctions
LineageProfilerIterate
Sample Classification and Model Evaluation in LineageProfiler
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
nsalomonis's Repositories
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
nsalomonis/Human-Bone-Marrow-Titration-Atlas
An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas
nsalomonis/BAM-to-Junction-BED
Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates
nsalomonis/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
nsalomonis/kallisto-splice
Modification of kallisto 0.43.1 for identifying splice junctions
nsalomonis/LineageProfilerIterate
Sample Classification and Model Evaluation in LineageProfiler
nsalomonis/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
nsalomonis/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation