nvladimus

@HelmchenLabSoftwareZürich

Pinned Repositories

benchtop-hardware
Hardware documentation for mesoSPIM-Bechtop microscope project
Language:HTML18 5 25
mesoSPIM-control
Image acquisition software for mesoSPIM light-sheet microscopes.
Language:Jupyter Notebook37 13 4412
daoSPIM
daoSPIM microscope project: software and hardware
Language:Jupyter Notebook11 1 02
kekse
Rapid GUI building for instrument control (PyQt5 based)
Language:Python8 1 01
lens-testing
Code for optical lens testing
Language:Jupyter Notebook3 1 00
npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
Language:Python35 6 912
WFS
LabVIEW and Python control of a (Thorlabs) Shack-Hartmann sensor
Language:Jupyter Notebook7 6 21
ZebrafishBrainRegistration_Zbrain_ANTs
Non-rigid registration of zebrafish brains to the Z-Brain Atlas using ANTs
Language:Jupyter Notebook3 2 01

nvladimus's Repositories

nvladimus/npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
Language:Python35 6 912
nvladimus/daoSPIM
daoSPIM microscope project: software and hardware
Language:Jupyter Notebook11 1 02
nvladimus/kekse
Rapid GUI building for instrument control (PyQt5 based)
Language:Python8 1 01
nvladimus/lens-testing
Code for optical lens testing
Language:Jupyter Notebook3 1 00
nvladimus/ITK_sandbox
Registration and deconvolution of 3/4D microscopy images using simpleITK
Language:Jupyter Notebook2 1 01
nvladimus/rapidcell
Multiscale modeling of E.coli chemotaxis
Language:Jupyter Notebook2 1 01
nvladimus/MiraoControl
basic control of Mirao52e deformable mirror
Language:Jupyter Notebook1 2 01
nvladimus/OpenMicroscopy
Non-comprehensive list of projects and resources related to open microscopy.
1 0 0
nvladimus/ZebrafishFunctionalMaps_LinearRegression
Computing functional maps in zebrafish brain
Language:Jupyter Notebook1 1 13
nvladimus/zebrascope_targets
Tools for two-photon ablation using Zebrascope.
Language:Python1 1 02
nvladimus/ALPAO-interface
Interface to ALPAO DM-97
Language:C1 0
nvladimus/blink-led-python
Hello-world tutorials on hardware programming in python
Language:Python1 0
nvladimus/ClearMap2
ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap
Language:Jupyter Notebook0 0
nvladimus/grbl-Mega
An open source, embedded, high performance g-code-parser and CNC milling controller written in optimized C that will run on an Arduino Mega2560
Language:C0 0
nvladimus/Instrumental
Python-based instrumentation library from the Mabuchi Lab.
Language:Python0 0
nvladimus/Marlin
Optimized firmware for RepRap 3D printers based on the Arduino platform.
Language:C1 0
nvladimus/meta
For laying organizational groundwork
0 0
nvladimus/micro-manager
Microscope control and image acquisition integrated with ImageJ.
Language:C++1 0
nvladimus/opto
Python interface to Optotune focus-tunable lenses
Language:Python0 0
nvladimus/pulse_counter
Arduino code for generating DC bias triggered by external device (e.g. camera). PCB design for adding generated DC bias to an input AO signal.
Language:C++1 0
nvladimus/pymeasure
Scientific measurement library for instruments, experiments, and live-plotting
Language:Python1 0
nvladimus/PyZWOEFW
Python library for controlling the electronic filter wheel developed by ZWO
Language:Python0 0
nvladimus/qudi
A modular laboratory experiment management suite.
Language:Python0 0
nvladimus/ray_tracer
basic ray tracer
Language:Jupyter Notebook1 0
nvladimus/spherical_aberration
Ray tracing of spherical aberration in microscopy
Language:Jupyter Notebook1 0
nvladimus/Sprinter
Firmware for RepRap printers and similar devices
Language:C1 0
nvladimus/storm-control
Microscope control software
Language:Python1 0
nvladimus/view
Model/View for exa-spim
Language:Python
nvladimus/voxel
General purpose microscope control repository
Language:Python
nvladimus/workstation
Janelia Workstation
Language:Java0 0