Pinned Repositories
2016-adv-begin-shell-genomics
Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
2020-08-17-ucmerced
Carpentry workshop for GROW
ACTINN-PyTorch
An easy-to-use PyTorch implementation of Automatic Cell-Types Identification of single-cell RNA sequencing using Neural Networks (ACTINN) [Ma et al].
ACTIVA
The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders
Asgard
CD8_Follicular_Analysis
Scripts for reproducing the RNAseq analysis performed in "CD8 follicular T cells localize throughout the follicle during germinal center reactions and maintain cytolytic and helper properties."
DavalosHeydari_scANNA
Scripts for scRNAseq preprocessing, data analysis, and figure generation for Davalos & Heydari et al. (2023)
GSE141784_Reanalysis
N-ACT
The public repository for N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification
odavalos's Repositories
odavalos/ACTIVA
The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders
odavalos/merced-weather
Use Github Actions to automatically update a weather graph every day
odavalos/ACTINN-PyTorch
An easy-to-use PyTorch implementation of Automatic Cell-Types Identification of single-cell RNA sequencing using Neural Networks (ACTINN) [Ma et al].
odavalos/Asgard
odavalos/bioinformaticmixedbag
odavalos/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
odavalos/CD8_Follicular_Analysis
Scripts for reproducing the RNAseq analysis performed in "CD8 follicular T cells localize throughout the follicle during germinal center reactions and maintain cytolytic and helper properties."
odavalos/DavalosHeydari_scANNA
Scripts for scRNAseq preprocessing, data analysis, and figure generation for Davalos & Heydari et al. (2023)
odavalos/N-ACT
The public repository for N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification
odavalos/ISLR-tidymodels-labs
odavalos/khroma
:art: Colour Schemes for Scientific Data Visualization
odavalos/machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
odavalos/manuscript-templates
LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
odavalos/merced-weather-py
This repository creates a daily updated weather graph using python, and it is a recreation of the merced-weather repository.
odavalos/N-ACT-TrainingScripts
A repository to host the main scripts for training (and pre-training) N-ACT
odavalos/publication_perfect
Six hour hands-on to creating publication-quality plots in R
odavalos/r
Using R with Jupyter / RStudio on Binder
odavalos/resume
Software developer resume in Latex
odavalos/scANNA
The main repository hosting the implementation of scANNA (single-cell ANalysis using Neural Attention)
odavalos/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
odavalos/scRNA-seq_online
odavalos/scSplit
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
odavalos/SoftAdapt
Implementation of the SoftAdapt paper (techniques for adaptive loss balancing of multi-tasking neural networks)
odavalos/stable-diffusion
A latent text-to-image diffusion model
odavalos/stablediffusion
High-Resolution Image Synthesis with Latent Diffusion Models
odavalos/stat_rethinking_2022
Statistical Rethinking course winter 2022
odavalos/trvae-pytorch
remake of trvaep due to original having possible circular import
odavalos/trvaep
odavalos/turboGliph
R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
odavalos/Tutorials
This Repository will host basic Tutorial for getting started with SingleCell Analysis in Python