Pinned Repositories
pypop
PyPop: Python for Population Genomics
bioconda-recipes
Conda recipes for the bioconda channel.
biopython
Official git repository for Biopython (originally converted from CVS)
Krona
Interactively explore metagenomes and more from a web browser.
altair
Declarative statistical visualization library for Python
biocozy-attic
nothing to see here
biocozy_bin
Bioinformatic tidbits
biocozy_blog
hugo site for biocozy.net
virominer
Bioinformatic pipeline for the discovery of novel viruses using high throughput sequencing data
odoublewen's Repositories
odoublewen/biocozy_bin
Bioinformatic tidbits
odoublewen/biocozy_blog
hugo site for biocozy.net
odoublewen/altair
Declarative statistical visualization library for Python
odoublewen/biocozy-attic
nothing to see here
odoublewen/virominer
Bioinformatic pipeline for the discovery of novel viruses using high throughput sequencing data
odoublewen/COSMOS2
Python Scientific Pipeline Management System
odoublewen/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
odoublewen/cutadapt
Cutadapt removes adapter sequences from sequencing reads
odoublewen/django-skeleton
Django and postgres inside of vagrant
odoublewen/dxWDL
Workflow Description Language compiler for the DNAnexus platform
odoublewen/five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
odoublewen/holoviews
With Holoviews, your data visualizes itself
odoublewen/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
odoublewen/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
odoublewen/patterns
A curated collection of Nextflow implementation patterns
odoublewen/prefect
Prefect is a workflow orchestration tool empowering developers to build, observe, and react to data pipelines
odoublewen/scikit-image
Image processing in Python
odoublewen/singularity
Singularity: Application containers for Linux
odoublewen/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
odoublewen/spacktree
automated deployment of spack application tree
odoublewen/tensorflow_docs
TensorFlow documentation
odoublewen/virominer2
A Snakemake based workflow for automatic filtering, assembly, and annotation of viral genomes present in metagenomic data