BIDS Prov
Opened this issue · 3 comments
Title
BIDS Prov
Short description and the goals for the OHBM BrainHack
Provenance is useful for interpreting and comparing scientific results as well as enabling reusable data and analysis. BIDS prov is a BIDS extension proposal to formalize a provenance framework for BIDS. The framework proposal is based on "w3c prov" and has been adapted for brain imaging. Currently the proposal is drafted in a google doc and contains most of the specifications needed but is lacking some illustrative examples. In particular, examples with BIDS-derivatives outputs using common neuroimaging software such as Freesurfer
are challenging because not entirely formalized in the BIDS specification.
The aim of this project is threefold:
- Provide complete examples of the BIDS-derivatives specification for
Freesurfer
,SPM
,FSL
,AFNI
or your favorite processing tool - Propose updates to the specs as needed
- Get community feedback on the overall proposal in order to submit a final version
Link to the Project
https://github.com/bids-standard/BEP028_BIDSprov
Image for the OHBM brainhack website
https://raw.githubusercontent.com/bids-standard/BEP028_BIDSprov/master/img/w3c.svg
Project lead
Camille Maumet - Discord: cmaumet#0541; Github: @cmaumet
Satrajit Ghosh - Discord: satra#2606; Github @satra
Ryan Cali - Github: @rcali21
Dorota Jarecka - Discord dorota#4713; Github @djarecka
Chris Markiewicz - Discord: Chris Markiewicz#5926; Github: @effigies
Omar El Rifai - Discord: Omar ELR#9936: Github: @omar-rifai
Ghislain Vaillant - Discord ghisvail#2434: Github: @ghisvail
Main Hub
Glasgow
Other Hub covered by the leaders
- Glasgow
- Asia / Pacific
- Europe / Middle East / Africa
- Americas
Skills
Some experience with BIDS and/or neuroimaging software.
Recommended tutorials for new contributors
- Set up a brainhack friendly computing environment
- A introduction to Bash
- Python: Writing a script
- Python: Data analysis with Python
- Python: Visualisation
- Machine learning basics
- BIDS
- Machine learning for neuroimaging
- VCS: Using Git and Github
- VCS: Data management with Datalad
- Virtualization
- High Performance Computing: Oracle cloud resource
Good first issues
No response
Twitter summary
No response
Short name for the Discord chat channel (~15 chars)
BIDS-prov
Please read and follow the OHBM Code of Conduct
- I agree to follow the OHBM Code of Conduct during the hackathon
Thank you for submitting the project! We have 35 projects right now, woohoo! But that means the projects pitches will have to be short. We will give you tomorrow 2 minutes to pitch your project, you can have one slide or no slides!
If you decide to use a slide, please include the link to the slide here.
And don't worry, you will still have more time to talk about your project during the BrainHack :-)
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