Pinned Repositories
compbio-galaxy-wrappers
OHSU Galaxy wrappers.
cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
dockerized-tools
dos_connect
Data Object Registry Connect
funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
g2p-aggregator
Associations of genomic features, drugs and diseases
py-tes
Python SDK for the GA4GH Task Execution API
regulon-enrichment
tesseract
Python lib for remote code execution via the GA4GH TES API
wdl-pcawg-bwa-mem-workflow
WDL implementation of https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow
Oregon Health and Science University Computational Biology's Repositories
ohsu-comp-bio/tesseract
Python lib for remote code execution via the GA4GH TES API
ohsu-comp-bio/mIHC-ML
Machine learning for mIHC
ohsu-comp-bio/wdl-pcawg-sanger-cgp-workflow
WDL implementation of https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker
ohsu-comp-bio/aracne
Wrapper scripts for Aracne-AP, "Network Reverse Engineering through AP inference of Mutual Information"
ohsu-comp-bio/Galaxy-ML
Make machine learning simpler with Galaxy (Moved to https://github.com/goeckslab/Galaxy-ML)
ohsu-comp-bio/neoepitope_novelty
Tools for annotating neoepitope predictions for focus on peptide novelty
ohsu-comp-bio/ohsu-comp-bio.github.io
ohsu-comp-bio.github.io website.
ohsu-comp-bio/rockefeller_metabolomics
ohsu-comp-bio/viper
Wrapper scripts for viper's network regulator analysis and reporting.
ohsu-comp-bio/birdseed2vcf
Convert birdseed variant file with genotypes to a VCF file
ohsu-comp-bio/birdsuite
ohsu-comp-bio/cedar-gwas
ohsu-comp-bio/common-workflow-language
Repository for CWL Specfications
ohsu-comp-bio/cromwell
Workflow Execution Engine using WDL
ohsu-comp-bio/cytomine-utils
Utility scripts for Cytomine
ohsu-comp-bio/data-object-schemas
A repository for the schemas used for the data object service.
ohsu-comp-bio/ensembl-rest
rest container for ensembl services
ohsu-comp-bio/fast-data-dev
Kafka Docker for development. Kafka, Zookeeper, Schema Registry, Kafka-Connect, Landoop Tools, 20+ connectors
ohsu-comp-bio/GalaxyKickStart
Ansible playbooks for Galaxy Server deployment
ohsu-comp-bio/galaxytools
utilities packed Galaxy tool wrapper
ohsu-comp-bio/guppy
ohsu-comp-bio/indexd
Prototype index service server.
ohsu-comp-bio/kafka-connect-directory-source
ohsu-comp-bio/labkey-docker
Docker container for LabKey.
ohsu-comp-bio/mortar
ohsu-comp-bio/sheepdog
API for herding data submissions
ohsu-comp-bio/tes
Task Execution Schema (TES) library.
ohsu-comp-bio/tesnotebookspawner
Custom Spawner for Jupyterhub to start servers in systems conforming to the GA4GH task execution schema
ohsu-comp-bio/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
ohsu-comp-bio/tools-morinlab
Galaxy Tool Shed repositories maintained and developed by the Morin Lab.