Pinned Repositories
compbio-galaxy-wrappers
OHSU Galaxy wrappers.
cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
dockerized-tools
dos_connect
Data Object Registry Connect
funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
g2p-aggregator
Associations of genomic features, drugs and diseases
py-tes
Python SDK for the GA4GH Task Execution API
regulon-enrichment
tesseract
Python lib for remote code execution via the GA4GH TES API
wdl-pcawg-bwa-mem-workflow
WDL implementation of https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow
Oregon Health and Science University Computational Biology's Repositories
ohsu-comp-bio/dockerized-tools
ohsu-comp-bio/bcc
LabKey module for Brenden-Colson Center
ohsu-comp-bio/gdc-scan
A library for navigating and downloading from the GDC API
ohsu-comp-bio/wdl-pcawg-sanger-cgp-workflow
WDL implementation of https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker
ohsu-comp-bio/dcc-release
Second generation of the ICGC DCC release ETL built on Spark
ohsu-comp-bio/gaia_mutex_integration
ohsu-comp-bio/galaxy
Data intensive biology for everyone.
ohsu-comp-bio/ccc_client
Python client to enable some basic interactions with CCC services
ohsu-comp-bio/ansible-role-kibana
Ansible Role - Kibana
ohsu-comp-bio/bioapi-examples
ohsu-comp-bio/ccc_api
Protobuf Declaration of the CCC API
ohsu-comp-bio/ccc_status
Utility for querying workflow status and metadata on CCC.
ohsu-comp-bio/cd-group-ansible
configuration for CD Group infrastructure.
ohsu-comp-bio/common-workflow-language
Repository for CWL Specfications
ohsu-comp-bio/data-object-schemas
A repository for the schemas used for the data object service.
ohsu-comp-bio/dcc-cm
Configuration management and related automation
ohsu-comp-bio/dcc-common
Common modules for code reuse
ohsu-comp-bio/dcc-download
Modules that allow the creation, download and maintenance of large portal data sets
ohsu-comp-bio/dcc-portal
Data portal for exploring and accessing data
ohsu-comp-bio/dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
ohsu-comp-bio/dms-experimental-cm
ansible configuration for GDC API based DMS
ohsu-comp-bio/framespace
FrameSpace Reference Server
ohsu-comp-bio/framespace_python_client
Python client for Framespace servers.
ohsu-comp-bio/framespaceR
Framespace client for R
ohsu-comp-bio/gdc-experimental
an exploration of the gdc api
ohsu-comp-bio/ohsu-server-util
development utilities for ga4gh server
ohsu-comp-bio/SMC-RNA-Challenge
ohsu-comp-bio/task-execution-schemas
ohsu-comp-bio/task-execution-server
ohsu-comp-bio/thales
Placeholder repository for `Identity and Authorization` solutions for BMEG, G2P, exastack...