/protein_physicochemical_properties_calculator

ProtParam based program that outputs the id, pI, charge and molecular weight of each protein

Primary LanguagePythonMIT LicenseMIT

protein_physicochemical_properties_calculator DOI

ProtParam based program that outputs the id, pI, charge, molecular weight and pH of each protein

GUI stadalone program(.exe)

Protein physicochemical properties calculator: DOI

Binaries

The binary files for the linux and windows command line programs are located in DOI(no depedences needed)

Function

The program has 3 options for charge calculation:

  1. use 1 pH value for all proteins
  2. use 1 pH value different for each protein
  3. use many pH values each 1 of them for all proteins

Depedences

  1. python3.8 or later
  2. anaconda/miniconda
  3. argparse: pip3 install argparse (for the command line version of the program)
  4. Gooey: conda install -c conda-forge gooey (for the GUI version of the program)
  5. biopython: conda install -c conda-forge biopython
  6. pandas: conda install -c anaconda pandas