Python bindings for https://github.com/ome/ome-files-cpp
- Build the C++ libraries (
ome-common
,ome-files
,ome-xml
) and install them to aPREFIX
- Run
python setup.py build_ext -I${PREFIX}/include -L${PREFIX}/lib -R${PREFIX}/lib
followed bypython setup.py build
dump_planes.py
is a sample script that reads an OME-TIFF file and writes one plain TIFF image for each plane in the input file. For instance, from the examples
directory, you can run:
python dump_planes.py ../test/data/multi-channel-4D-series.companion.ome
You can also run a sample Jupyter notebook with the ome-files-jupyter Docker image. See https://github.com/openmicroscopy/ome-files-jupyter-docker for instructions.