createMultipleSpeciesModel function can not find in cobrapy
wupeng1998 opened this issue · 4 comments
Hi everyone, I want to simulate the interaction of bacterium like the method 2.7 of the article "https://pubmed.ncbi.nlm.nih.gov/36720400/", but I didn't find it in cobrapy createMultipleSpeciesModel function, how should I implement it in python?
This is a function in the (Matlab-based) cobratoolbox not in cobrapy. You could look into MICOM if you want to run microbial community models on Python.
This is a function in the (Matlab-based) cobratoolbox not in cobrapy. You could look into MICOM if you want to run microbial community models on Python.
Ok, thank you. I know it's a function on matlab, but I'm getting errors when I replicate it to python, so I was wondering if anyone has ever replicated this function from MATLAB to Python,.
The Community class in MICOM is somewhat similar, and the community objective is the same. So you could start there.
Closing for now since it's not really a bug in cobrapy. Feel free to open a discussion topic. Best.