Pinned Repositories
COBRA.jl
High-level, high-performance, constraint-based reconstruction and analysis in Julia
COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
MATLAB.devTools
MATLAB Development Tools
Medusa
Analysis of ensembles of metabolic network reconstructions
memote
memote – the genome-scale metabolic model test suite
optlang
optlang - sympy based mathematical programming language
swiglpk
Simple swig bindings for the GNU Linear Programming Kit
openCOBRA's Repositories
opencobra/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
opencobra/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
opencobra/optlang
optlang - sympy based mathematical programming language
opencobra/memote
memote – the genome-scale metabolic model test suite
opencobra/COBRA.jl
High-level, high-performance, constraint-based reconstruction and analysis in Julia
opencobra/swiglpk
Simple swig bindings for the GNU Linear Programming Kit
opencobra/MATLAB.devTools
MATLAB Development Tools
opencobra/Medusa
Analysis of ensembles of metabolic network reconstructions
opencobra/COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
opencobra/driven
Data-Driven Constraint-based analysis
opencobra/COBRA.papers
Repository for scripts related to reproducing the results of an individual publication
opencobra/cobra-component-models
Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.
opencobra/ctf
Chemical table files for constraint-based modelling
opencobra/memote-docker
Easily use the memote command line interface from a docker container.
opencobra/cookiecutter-memote
A cookiecuttter template for memote model repositories
opencobra/cookiecutter-python-package
Extensive cookiecutter template for openCOBRA Python packages.
opencobra/COBRA.binary
Linux, Windows and Mac binaries maintained by the constraint-based reconstruction and analysis community
opencobra/cobrapy-website
opencobra/kb_memote
opencobra/reconstructor
Open source tool for biochemical network reconstruction
opencobra/artenolis
Automated Reproducibility and Testing Environment for Licensed Software
opencobra/MASSef
opencobra/opencobra.github.io
Official openCOBRA website
opencobra/COBRA.java
Constraint-based reconstruction and analysis via Java
opencobra/COBRA.models
Set of models used for testing COBRA code in continuous integration environments
opencobra/cobrapy-scope
Evaluation of a user survey from 2020 on what scope of methods is desirable in COBRApy.
opencobra/escher
opencobra/jeweler
Test and grade genome-scale metabolic models (GEMs).
opencobra/memote-webservice
Run memote in a microservice with a frontend that allows you to upload and test models.
opencobra/sphinx_cobra_theme