opencobra/cobratoolbox

Issues

• Question - regarding the expectation of mcc ctf compile

  #2275 opened a month ago by supertick
  0

• How to use the toolkit to calculate rates

  #2267 opened 3 months ago by MerryTOm
  0

• Cobratoolbox crashes during initialisation on windows 10 (Matlab 2022b)

  #2245 opened 7 months ago by trjhensen
  4

• mgPipe > fastSetupCreator + createPersonalizedModel Interaction causes errors due to rmfield

  #2265 opened 4 months ago by safak-kilic
  1

• mgPipe PART2 issue

  #2261 opened 4 months ago by PejmanS
  3

• refactor how solver parameters are handled

  #2257 opened 5 months ago by rmtfleming
  0

• `optimizeCbModel` returning `NaN` for solution

  #2255 opened 5 months ago by nleroy917
  0

• DEMETER can be used for metabolic network optimization beyond intestinal microbiota?

  #2250 opened 6 months ago by hzau-gzy
  1

• Function out of work findRxnsFromMets.m

  #2248 opened 7 months ago by fenixwang-uml
  1

• Combining metabolite lists: Error using mergeTwoModels (line 164)

  #2247 opened 7 months ago by qkqk-hub
  1

• unrecongnized field name "annotation"

  #2244 opened 7 months ago by nleroy917
  1

• Gurobi error 10010: Model too large for size-limited license

  #2239 opened 7 months ago by qkqk-hub
  6

• Unrecognized function or variable 'TranslateSBML'.

  #2233 opened 7 months ago by 2132030
  3

• Missing Function "lrsInputHalfSpace"

  #2237 opened 7 months ago by farid-zare
  0

• Missing function "findTranscriptionValue"

  #2235 opened 7 months ago by farid-zare
  0

• Error using initCobraToolbox

  #2231 opened 7 months ago by 2132030
  1

• Error in findRxnsFromMet.m

  #2232 opened 7 months ago by Devlin-Moyer
  2

• How can the result file be converted to a readable file?

  #2215 opened 8 months ago by qkqk-hub
  2

• Tutorial revision

  #2218 opened 8 months ago by farid-zare
  0

• 'Infeasible' results from simulatePairwiseInteractions

  #2213 opened 9 months ago by majunyeong
  2

• Invalid MEX-file

  #2210 opened 9 months ago by kamoors
  0

• remove curl dependency

  #2192 opened 10 months ago by rmtfleming
  0

• Update numpy dependency

  #2176 opened a year ago by qacwnfq
  0

• "FVAOptForce" function Error

  #2153 opened a year ago by SiYeon-Ju
  0

• bug in writeSBML line 496

  #2122 opened a year ago by maziya
  3

• To create .CompartmentData for a model

  #2119 opened a year ago by hites77
  0

• sphinxcontrib-matlabdomain 0.19.0 pre-release

  #2112 opened a year ago by joeced
  0

• No Results from GDLS in latest version

  #2110 opened 2 years ago by SiYeon-Ju
  0

• Error in initCobraToolbox (line 358, 460)

  #2012 opened 2 years ago by SiYeon-Ju
  4

• writeCbModel without addition of '[c]'

  #2108 opened 2 years ago by SiYeon-Ju
  0

• importing ".omex" models

  #2104 opened 2 years ago by Laminsecin
  7

• scenario for a bug in pareto optimality

  #2093 opened 2 years ago by hariszaf
  3

• How to compute the C stoichiometric matrix with Julia

  #2088 opened 2 years ago by jialin3299
  1

• bqmodel and bqbiol annotations merged.

  #2080 opened 2 years ago by luciansmith
  0

• #Error : unrecognized field name "dual"

  #2058 opened 2 years ago by SiYeon-Ju
  1

• Error when using writeCbModel

  #2071 opened 2 years ago by RieCo432
  2

• documentation seems outdated and broken

  #2056 opened 2 years ago by Ampholyt
  2

• Error when running chrrSampler, "x0 not interior"

  #2069 opened 2 years ago by Bastien-N
  2

• Warning in prepareFastgapfill

  #2055 opened 2 years ago by pengqiannan
  2

• FastGapFill did not return valid results

  #2049 opened 2 years ago by pengqiannan
  0

• FindExcRxn returns non-Exc reactions

  #1990 opened 2 years ago by kamoors
  2

• Error in initCobraToolbox (line 212)

  #1975 opened 2 years ago by febedtu
  6

• essentialRxnsTasks in checkMetabolicTasks gives wrong results due to minimizeModelFlux design

  #2048 opened 2 years ago by Bastien-N
  2

• unable to run optimizeCbModel with error of "unrecongnized field name "dual"

  #2047 opened 2 years ago by blai1989
  2

• simulatePairwiseInteractions not returning expected values?

  #2009 opened 2 years ago by BooksAreMyChoiceWeapon
  6

• FastGapFill not working- file missing

  #2011 opened 2 years ago by kristycyw
  2

• COBRA Not able to install MATLAB

  #1998 opened 2 years ago by zatsura
  3

• Cobra path add

  #1999 opened 2 years ago by zatsura
  1

• COBRA tool box add to path

  #2000 opened 2 years ago by zatsura
  0

• Can't undrestand why luLI and LuSI are not considered as a compartment in Harvey and Harvetta models

  #1989 opened 2 years ago by Ilhem36
  0