rmtfleming
COBRA Toolbox Lead developer. Associate Professor, NUI Galway & Assistant Professor, Leiden University.
University of GalwayGalway, Ireland.
Pinned Repositories
artenolis
Automated Reproducibility and Testing Environment for Licensed Software
COBRA.jl
High-level, high-performance, constraint-based reconstruction and analysis in Julia
MATLAB.devTools
MATLAB Development Tools
calciumPipe
A pipeline for calcium image analysis
COBRA.models
Set of models used for testing COBRA code in continuous integration environments
COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
condalab
MATLAB utility to switch between Anaconda environments
ctf
Chemical table files for constraint-based modelling
Templates
A repository for desktop documents templates
rmtfleming's Repositories
rmtfleming/Templates
A repository for desktop documents templates
rmtfleming/COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
rmtfleming/calciumPipe
A pipeline for calcium image analysis
rmtfleming/COBRA.models
Set of models used for testing COBRA code in continuous integration environments
rmtfleming/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
rmtfleming/condalab
MATLAB utility to switch between Anaconda environments
rmtfleming/ctf
Chemical table files for constraint-based modelling
rmtfleming/dGPredictor
rmtfleming/Documenter.py
rmtfleming/EscherConverter
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
rmtfleming/gaimc
Graph Algorithms in Matlab Code
rmtfleming/GeoCalcLib
Interface for MATLAB to use LRS library and derivative functionality.
rmtfleming/looplessFluxSampler
Toolbox for performing loopless flux sampling analysis of large-scale metabolic models
rmtfleming/lusol
Matlab interface to LUSOL
rmtfleming/molgenis-emx2
MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
rmtfleming/octave-networks-toolbox
A set of graph/networks analysis functions in Octave
rmtfleming/pdco
rmtfleming/PolytopeSamplerMatlab
A matlab implementation for sampling log-concave distributions with polytope constraints
rmtfleming/projects-rd-recon4imd
rmtfleming/ReactionDecoder
Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool
rmtfleming/Recon
The aim of this repository is to assist in further improving and expanding the genome-scale human metabolic reconstruction through the use of issues. Please note that pull requests will be automatically closed.
rmtfleming/Smith-Decomposition
rmtfleming/sphinxcontrib-matlabdomain
rmtfleming/Volume-and-Sampling
Code for high-dimensional volume computation, Gaussian integration, and uniform/Gaussian sampling