Open Targets

An innovative, multi-year, industry-academia partnership that generates research insights to support systematic drug target identification and prioritisation

Pinned Repositories

genetics-api
Open Targets Genetics GraphQL API
Language:Scala11 11 05
genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
Language:Python16 6 08
genetics-docs
11 17 01
genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
Language:Python25 7 08
genetics-gold-standards
GWAS gold standards repository
Language:Python29 13 01
genetics-sumstat-harmoniser
Harmonise GWAS summary statistics against a reference VCF
Language:Python38 8 06
gentropy
Open Targets python framework for post-GWAS analysis
Language:Jupyter Notebook34 3 08
issues
Issue tracker for Open Targets Platform and Open Targets Genetics Portal
12 12 3.5k2
OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
Language:Python20 14 06
opentargets.github.io
Open Targets corporate website code using Jekyll
Language:HTML8 8 03

Open Targets's Repositories

opentargets/gentropy
Open Targets python framework for post-GWAS analysis
Language:Jupyter Notebook34 3 08
opentargets/OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
Language:Python20 14 06
opentargets/issues
Issue tracker for Open Targets Platform and Open Targets Genetics Portal
12 12 3.5k2
opentargets/genetics-api
Open Targets Genetics GraphQL API
Language:Scala11 11 05
opentargets/json_schema
Open Targets target-disease association schema
Language:Python9 18 010
opentargets/platform-api
GraphQL and Rest API rewrite of the current Open Targets platform API
Language:Scala9 7 05
opentargets/opentargets.github.io
Open Targets corporate website code using Jekyll
Language:HTML8 8 03
opentargets/platform-etl-backend
Language:Scala8 8 08
opentargets/stopReasons
Analysis on stop reasons
Language:Python8 2 02
opentargets/evidence_datasource_parsers
script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.
Language:Python7 11 02
opentargets/genetics-pipe
Language:Scala6 7 02
opentargets/ot-ui-apps
Open Targets Platform web applications
Language:JavaScript5 7 211
opentargets/platform-input-support
Open Targets Platform input support project.
Language:Python5 9 05
opentargets/curation
mappings used by the open targets platform to integrate data sources
Language:Python4 12 01
opentargets/standalone-deployment-platform
Standalone local deployment for Open Targets Platform
Language:Shell3 2 01
opentargets/baseline-expression
Code and documentation for baseline expression and specificity data.
Language:Jupyter Notebook1 5 0
opentargets/orchestration
Open Targets pipeline orchestration layer
Language:Python1 1 00
opentargets/ot-release-metrics
Collection and visualisation of Open Targets Platform release metrics.
Language:Python1 6 00
opentargets/terraform-google-opentargets-platform
Terraform module for Open Targets Platform infrastructure definition
Language:HCL1 7 02
opentargets/ot-ai-api
Language:JavaScript0 5 00
opentargets/platform-docs
https://platform-docs.opentargets.org/
0 8 01
opentargets/platform-output-support
POS is an automatic and unified place to perform a release of OT Platform to the public
Language:Shell0 7 03
opentargets/experimental_programme
Language:Python6 0
opentargets/gentropy-input-support
Non-Spark preprocessing for datasource ingestion
Language:Python
opentargets/gentroutils
Utility CLI tools for gentropy orchestration
Language:Python
opentargets/google-batch-monitor
Language:Shell
opentargets/k8s-gcp-platform
This repository defines an Open Targets Platform deployment on top of a Kubernetes cluster
Language:Shell
opentargets/opensearch-nanny
Opensearch health-checking sidecar
Language:Go
opentargets/ot-vis-playground
Language:JavaScript
opentargets/parquet2json
Parquet to JSON lines converter
Language:Python