Open Targets
An innovative, multi-year, industry-academia partnership that generates research insights to support systematic drug target identification and prioritisation
Pinned Repositories
genetics-api
Open Targets Genetics GraphQL API
genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
genetics-docs
genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
genetics-gold-standards
GWAS gold standards repository
genetics-sumstat-harmoniser
Harmonise GWAS summary statistics against a reference VCF
gentropy
Open Targets python framework for post-GWAS analysis
issues
Issue tracker for Open Targets Platform and Open Targets Genetics Portal
OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
opentargets.github.io
Open Targets corporate website code using Jekyll
Open Targets's Repositories
opentargets/gentropy
Open Targets python framework for post-GWAS analysis
opentargets/OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
opentargets/issues
Issue tracker for Open Targets Platform and Open Targets Genetics Portal
opentargets/platform-api
GraphQL and Rest API rewrite of the current Open Targets platform API
opentargets/stopReasons
Analysis on stop reasons
opentargets/json_schema
Open Targets target-disease association schema
opentargets/opentargets.github.io
Open Targets corporate website code using Jekyll
opentargets/platform-etl-backend
opentargets/evidence_datasource_parsers
script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.
opentargets/ot-ui-apps
Open Targets Platform web applications
opentargets/platform-input-support
Open Targets Platform input support project.
opentargets/curation
mappings used by the open targets platform to integrate data sources
opentargets/standalone-deployment-platform
Standalone local deployment for Open Targets Platform
opentargets/baseline-expression
Code and documentation for baseline expression and specificity data.
opentargets/orchestration
Open Targets pipeline orchestration layer
opentargets/ot-release-metrics
Collection and visualisation of Open Targets Platform release metrics.
opentargets/terraform-google-opentargets-platform
Terraform module for Open Targets Platform infrastructure definition
opentargets/ot-ai-api
Specialised API service that provides AI-driven endpoints to support the Open Targets web application, integrating natural language processing (NLP) and data extraction features
opentargets/platform-docs
https://platform-docs.opentargets.org/
opentargets/platform-output-support
POS is an automatic and unified place to perform a release of OT Platform to the public
opentargets/gentropy-input-support
Non-Spark preprocessing for datasource ingestion
opentargets/gentroutils
Utility CLI tools for gentropy orchestration
opentargets/google-batch-monitor
opentargets/k8s-gcp-platform
This repository defines an Open Targets Platform deployment on top of a Kubernetes cluster
opentargets/ontoform
Transform ontologies into NDJSONs optimized for Open Targets pipeline
opentargets/ot-snapshot
Snapshots for all the components used to generate a release of the Open Targets Platform
opentargets/ot-vis-playground
opentargets/parquet2json
Parquet to JSON lines converter
opentargets/station-pos
This is a channel for POS to announce events
opentargets/timeseries
Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.