Open Targets
An innovative, multi-year, industry-academia partnership that generates research insights to support systematic drug target identification and prioritisation
Pinned Repositories
genetics-api
Open Targets Genetics GraphQL API
genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
genetics-docs
genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
genetics-gold-standards
GWAS gold standards repository
genetics-sumstat-harmoniser
Harmonise GWAS summary statistics against a reference VCF
gentropy
Open Targets python framework for post-GWAS analysis
issues
Issue tracker for Open Targets Platform and Open Targets Genetics Portal
OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
opentargets.github.io
Open Targets corporate website code using Jekyll
Open Targets's Repositories
opentargets/genetics-gold-standards
GWAS gold standards repository
opentargets/genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
opentargets/genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
opentargets/genetics-docs
opentargets/genetics-v2d-data
Variant to disease dataset workflows for Open Targets Genetics
opentargets/genetics-l2g-scoring
Locus-to-gene scoring pipeline
opentargets/genetics-v2g-data
Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics
opentargets/platform-etl-openfda-faers
Open Targets ETL to process OpenFDA FAERS DB
opentargets/genetics-sumstat-data
Workflows for processing summary statistics files for Open Targets Genetics
opentargets/mendelian-randomisation
opentargets/genetics-backend
QC, spin VMs, load data into DBs, create LUTs and other fun backend stuff we need to do to spin https://genetics.opentargets.org
opentargets/platform-etl-literature
LIterature coNcept Knowledgebase for OpenTarget
opentargets/genetics-variant-annotation
Workflow to produce variant index annotation for Open Targets Genetics
opentargets/validator
opentargets/platform-checks
opentargets/approvalsSupport
Retrospective of drug approvals support
opentargets/drugDataEnrichment
The OpenTargets drug datasets enriched with genetics data using structural information.
opentargets/ebi-helper-ftp-sync
Docker container definition for helping on data synchronization tasks into the EBI FTP Service
opentargets/ebi-to-gcp
Synchronise EBI LSF locations to Google Cloud Platform
opentargets/genetics-loadtests
opentargets/genetics-output-support
GOS is an automatic and unified place to perform a release of OT Genetics to the public
opentargets/genetics_data_revision
This repository hosts the code to adapt the genetics output data to their data and schema iterations
opentargets/liebling-blog-theme
Beautiful and clean Ghost theme that is easy and comfortable to use. To get the latest version please head over the releases page 👉🏼
opentargets/next-ot-ui-apps
POC for Next.js based front end
opentargets/ot-sitemap-cli
Command line program to generate sitemaps for Open Targets releases
opentargets/QC_sumstat
Quality control tests on summary statistics data
opentargets/target_engine
opentargets/terraform-google-genetics-portal
Repo for Genetics Portal deployment
opentargets/timeseries
Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.
opentargets/uniprot-evidence-parser
Pipeline to generate disease/target evidence from Uniprot data