openvax/varlens

Issues

• Depends on old pysam

  #30 opened 7 years ago by iskandr
  0

• Output .bam

  #29 opened 8 years ago by JPFinnigan
  0

• Deploy to PyPi with Travis?

  #23 opened 9 years ago by tavinathanson
  5

• Output header to SAM file

  #22 opened 9 years ago by iskandr
  0

• varlens-allele-support doesn't acceptable positional BAM argument

  #20 opened 9 years ago by iskandr
  2

• cleanup varlens and make a pip release

  #13 opened 9 years ago by timodonnell
  2

• Three suggestions for reporting.

  #8 opened 9 years ago by JPFinnigan
  6

• get rid of the python-based dsl

  #17 opened 9 years ago by timodonnell
  0

• varlens-variants: correctly handle duplicate variants from multiple files

  #12 opened 9 years ago by timodonnell
  1

• varlens-variants: add an annotation for membership in capture kit intervals

  #14 opened 9 years ago by timodonnell
  1

• Failing unit tests

  #10 opened 9 years ago by iskandr
  2

• Support Python 3.X

  #5 opened 9 years ago by armish
  3

• varlens allele support is too slow

  #7 opened 9 years ago by timodonnell
  1

• support filtering variants by evidence

  #6 opened 9 years ago by timodonnell
  0

• Multiple tests fail on a vanilla installation

  #1 opened 9 years ago by armish
  2