Pinned Repositories
ai-notebooks
Some ipython notebooks implementing AI algorithms
AllenSDK
code for reading and processing Allen Institute for Brain Science data
AstraStack
Astrophotography Stacking Application
audio
Data manipulation and transformation for audio signal processing, powered by PyTorch
auto_avsr
Auto-AVSR: Lip-Reading Sentences Project
neuron_reduce
NEURON_tutorial
Tutorial for understanding how to use NEURON simulation environment
sbx2imagej
sbx2imagej, is a wrapper between sbxreader and pyimagej, sbxreader takes care of loading sbx files and pyimagej takes care of showing them in imagej.
Specious_Regularity
sub-threshold-statistics
sub-threshold-stats
orena1's Repositories
orena1/sbx2imagej
sbx2imagej, is a wrapper between sbxreader and pyimagej, sbxreader takes care of loading sbx files and pyimagej takes care of showing them in imagej.
orena1/audio
Data manipulation and transformation for audio signal processing, powered by PyTorch
orena1/auto_avsr
Auto-AVSR: Lip-Reading Sentences Project
orena1/bigstream
Tools for distributed alignment of massive images
orena1/bokeh
Interactive Data Visualization in the browser, from Python
orena1/Specious_Regularity
orena1/sub-threshold-statistics
sub-threshold-stats
orena1/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
orena1/d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.
orena1/dask_stitch
Linear blend stitching for map_overlap calls in dask
orena1/docs
Documentation for napari (other than API docs)
orena1/docs-1
Documentation site
orena1/ezfish_pipeline
orena1/face_recognition
The world's simplest facial recognition api for Python and the command line
orena1/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
orena1/fairseq2
FAIR Sequence Modeling Toolkit 2
orena1/jepa
PyTorch code and models for V-JEPA self-supervised learning from video.
orena1/KIT-GE-3-Cell-Segmentation-for-CTC
Distance-transform-prediction-based segmentation method used for our submission to the 6th edition of the ISBI Cell Tracking Challenge 2021 as team KIT-Sch-GE (2) (now KIT-GE (3)).
orena1/KIT-GE-3-Cell-Tracking-for-CTC
orena1/NeMo
NeMo: a toolkit for conversational AI
orena1/neptune-pytorch
orena1/rnr-exm
orena1/scikit-image
Image processing in Python
orena1/scipy
SciPy library main repository
orena1/slurm
Slurm: A Highly Scalable Workload Manager
orena1/slurm_web
Website-based resource monitor for Slurm system
orena1/SRDTrans
SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
orena1/stracking
python library for particles tracking in 2D+t and 3D+t scientific images
orena1/suite2p
cell detection in calcium imaging recordings
orena1/VAME
Variational Animal Motion Embedding