Pinned Repositories
AQuA
An event-based tool for analyzing and quantifying calcium or glutamate imaging data
bhtsne
Barnes-Hut t-SNE
brick
a general-purpose Matlab toolbox
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
connectomicsPCV
Set of tools for the connectomics post challenge verification
hamamatsuOrcaTools
Set of tools to work with files created with Hamamatsu Orca cameras and their software (Hokawo and HCImage)
netcal
NETwork CALcium analysis
sessionManager
Simple MATLAB session manager to handle different sets of open editor files and paths.
te-causality
Generalized Transfer Entropy program for model-free connectivity analysis.
orlandi's Repositories
orlandi/netcal
NETwork CALcium analysis
orlandi/hamamatsuOrcaTools
Set of tools to work with files created with Hamamatsu Orca cameras and their software (Hokawo and HCImage)
orlandi/te-causality
Generalized Transfer Entropy program for model-free connectivity analysis.
orlandi/connectomicsPCV
Set of tools for the connectomics post challenge verification
orlandi/sessionManager
Simple MATLAB session manager to handle different sets of open editor files and paths.
orlandi/AQuA
An event-based tool for analyzing and quantifying calcium or glutamate imaging data
orlandi/bhtsne
Barnes-Hut t-SNE
orlandi/brick
a general-purpose Matlab toolbox
orlandi/CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
orlandi/CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
orlandi/connectomicsPerspectivesPaper
Code, datasets and tools used for the perspectives paper
orlandi/CoTETE.jl
Continuous-Time Event-based Transfer Entropy
orlandi/deepinterpolation
orlandi/esp32-camera
orlandi/export_fig
A MATLAB toolbox for exporting publication quality figures
orlandi/FPA
Fiber photometry analysis
orlandi/helperTools
common functions for everyday (personal) MATLAB use
orlandi/jidt
JIDT: Java Information Dynamics Toolkit for studying information-theoretic measures of computation in complex systems
orlandi/jsonlab
JSONLab: a native JSON/UBJSON/MassagePack encoder/decoder for MATLAB/Octave
orlandi/micropython
MicroPython - a lean and efficient Python implementation for microcontrollers and constrained systems
orlandi/neurondyn
Simulates neuronal culture dynamics using a modified Izhikevich model
orlandi/neurondyngenMatlab
Matlab tools for neurondyn and neurongen
orlandi/neurongen
Generates realistic neuronal networks using arbitrary geometrical patterns as a substrate
orlandi/neuronGM
orlandi/OASIS_matlab
orlandi/papercite
Bibtex plugin for wordpress
orlandi/SimKernel
SimKernel controls parameter scans and iterations for any given C++ code
orlandi/spikes
spike extraction from calcium signals (Deneux et al., 2016)
orlandi/tensortools
Fitting and visualizing tensor decompositions in Python