Pinned Repositories
203.210-Genetics-Evolution
Computational resources for 203.210
203.311
Genome Science for Genome Scientists
bac-pulce
methods for analysing bac-pulce data
bacterial-genomics-intro
This was originally forked from Seb Schmeier's tutorial but is now independent.
barcode-competitions
R code and configs for plotting the results of competitions between barcoded bacterial strains
bonito_benchmarks
Benchmarking bonito basecaller using E. coli assemblies
clone-correct
Corrects plasmid sequences for unconfirmed clones using nanopore sequence and annotates
flo-mlst
Code to analyse multiplexed mlst amplicons
hourglass-assembly
Assembly steps for hourglass genome
simple-ONT-assembly
Simple instructions for long read Oxford Nanopore assembly with some extras
osilander's Repositories
osilander/bonito_benchmarks
Benchmarking bonito basecaller using E. coli assemblies
osilander/203.311
Genome Science for Genome Scientists
osilander/simple-ONT-assembly
Simple instructions for long read Oxford Nanopore assembly with some extras
osilander/203.210-Genetics-Evolution
Computational resources for 203.210
osilander/bac-pulce
methods for analysing bac-pulce data
osilander/bacterial-genomics-intro
This was originally forked from Seb Schmeier's tutorial but is now independent.
osilander/barcode-competitions
R code and configs for plotting the results of competitions between barcoded bacterial strains
osilander/clone-correct
Corrects plasmid sequences for unconfirmed clones using nanopore sequence and annotates
osilander/flo-mlst
Code to analyse multiplexed mlst amplicons
osilander/hourglass-assembly
Assembly steps for hourglass genome
osilander/midnight-artic-1200
primers and bed files associated with the Midnight ARTIC 1200 bp primer scheme for SARS-CoV-2 sequencing
osilander/genomics-tutorial
An introductory tutorial into genomics (forked from Sebastian Schmeier)
osilander/microbiome-abstract
osilander/NanoSim
Nanopore sequence read simulator
osilander/ncov-rbk-seq
scripts used for Freed et al Biology Methods and Protocols 2020
osilander/rat-diet-analysis
Code for analysing and plotting data from Freed et al. Nanopore sequencing of metagenomic DNA from rat stomach contents to quantify diet
osilander/sim-hyb-assemble
simulate illumina and ONT reads to test effects on assembly of bacterial genomes