owenwilkins

owenwilkins's Stars

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.4k1681.7k1.8k

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k17010612

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k107308558

• galaxyproject/galaxy

  Data intensive science for everyone.

  Language:Python1.4k716.3k1k

• bigdatagenomics/adam

  ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

  Language:Scala1k1001.2k308

• mdshw5/pyfaidx

  Efficient pythonic random access to fasta subsequences

  Language:Python458914575

• ENCODE-DCC/atac-seq-pipeline

  ENCODE ATAC-seq pipeline

  Language:Python38425313172

• broadinstitute/gtex-pipeline

  GTEx & TOPMed data production and analysis pipelines

  Language:Python3422881174

• tabdelaal/scRNAseq_Benchmark

  Bench-marking classification tools for scRNA-seq data

  Language:Python18371656

• YaoLab-Bioinfo/shinyCircos

  an R/shiny application for creation of Circos plot interactively

  Language:HTML15481947

• mdshw5/fastqp

  Simple FASTQ quality assessment using Python

  Language:Python10963014

• crazyhottommy/pyflow-ChIPseq

  a snakemake pipeline to process ChIP-seq files from GEO or in-house

  Language:Python10310239

• BradnerLab/pipeline

  bradner lab computation pipeline scripts

  Language:Python53145147

• BD2KGenomics/toil-rnaseq

  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

  Language:Python401513310

• guigolab/grape-nf

  An automated RNA-seq pipeline using Nextflow

  Language:Nextflow3667410

• emiraldi/infTRN_lassoStARS

  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

  Language:Fortran14316

• simonsfoundation/jp_gene_viz

  A collection of visualizations for genomics related information for use with Jupyter notebooks.

  Language:Jupyter Notebook101479

• komalsrathi/rnaseq-star-rsem-pipeline

  STAR-RSEM pipeline for RNA-seq data processing

  Language:Python5203

• flatironinstitute/ILCnetworks

  Gene regulatory networks for intestinal innate lymphoid cells

  Language:Jupyter Notebook42

• Christensen-Lab-Dartmouth/Lab-Tutorials

  Programming tutorials for the Christensen Lab

  Language:R330

• Christensen-Lab-Dartmouth/Normal-breast-5hmC

  Language:HTML3311

• Christensen-Lab-Dartmouth/OxyBS

  Vignette for data processing and use of the fitOxBS function from the OxyBS R package

  Language:R3402

• eahouseman/RefFreeEWAS

  RefFreeEWAS (R package on CRAN)

  Language:Jupyter Notebook32

• Christensen-Lab-Dartmouth/HNSCC-miRSNP-Survival

  Language:R2301

• Christensen-Lab-Dartmouth/shared_450K_annotation

  Language:R231