p-robot

covid19_r_map_ew

Illustration of a map of England and Wales in R using data on R(t) from LocalCovid19Tracker

OpenABM-Covid19

OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

POPART-IBM

C code of the individual-based model developed as part of the HPTN071 (PopART) trial

como_command_line

Scripts to run the CoMo model as a basic R script and pair with various calibration approaches

context_matters

Code for the manuscript "Context Matters: using reinforcement learning to develop human-readable, state-dependent outbreak response policies"

covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

fmd_realtime_decisionmaking

Code for manuscript "Real-time decision-making during emergency disease outbreaks"

OpenABM-Covid19-utilities

A bunch of helper scripts/functions for using with the OpenABM-Covid19 model

voting_systems

Vote-processing rules used in elections, here applied to output from epidemiological models. Defined rules are: first-past-the-post, Borda Count, Coombs Method, Alternative Vote.

p-robot/como_command_line

Scripts to run the CoMo model as a basic R script and pair with various calibration approaches

p-robot/voting_systems

Vote-processing rules used in elections, here applied to output from epidemiological models. Defined rules are: first-past-the-post, Borda Count, Coombs Method, Alternative Vote.

p-robot/aws_setup

p-robot/BU-COVID

BU-COVID project

p-robot/closing_gaps_arm_c

Closing gaps analysis for arm C communities

p-robot/como

CoMo COVID-19 App repository.

p-robot/como_egypt_analysis

p-robot/comoOdeCpp

Implements CoMo Consortium's COVID-19 transmission model in Rcpp.

p-robot/covid19_r_map_ew

Illustration of a map of England and Wales in R using data on R(t) from LocalCovid19Tracker

p-robot/covid19uk

p-robot/Elicitation-1

MMODS Elicitation 1: COVID-19 reopening strategies at the county level in the face of uncertainty

p-robot/fitode

general purpose ODE fitting tool in R

p-robot/german-nouns

A list of ~100,000 German nouns and their grammatical properties compiled from WiktionaryDE as CSV file. Plus a module to look up the data and parse compound words.

p-robot/gridworld

Reinforcement learning example, solving the gridworld problem

p-robot/inctools

Incidence Estimation Tools

p-robot/Individual-based-model-for-HIV-among-FSWs-and-their-clients

Code for the paper: "HIV incidence and impact of interventions among female sex workers and their clients in the Middle East and North Africa: Mathematical modelling analysis"

p-robot/JUNE

p-robot/last_mile

Analysis scripts for project 'Modelling to achieve the greatest and most durable reduction in HIV incidence in high burden settings'

p-robot/OpenABM-Covid19

p-robot/POPART-IBM

C code of the individual-based model developed as part of the HPTN071 (PopART) trial

p-robot/rl_mountain_car

Mountain car example of reinforcement learning

p-robot/scalene

Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python

p-robot/sge

Snakemake profile for the (Sun) Grid Engine queueing system

p-robot/SM-ExpFam-LFI

Code for the paper: "Score Matched Conditional Exponential Families for Likelihood-Free Inference", https://jmlr.org/papers/v23/21-0061.html

p-robot/smart-fp

p-robot/smart-hiv

WHO SMART Guidelines Content Implemntation Guide for HIV

p-robot/smart-ig-empty

Empty IG for make new SMART Guidelines

p-robot/synthetic-contact-matrices

Updates to the synthetic contact matrices

p-robot/test_git

p-robot/voting_systems_epi_analysis

Applying vote processing rules to output from multiple epidemiological models