Pinned Repositories
covid19_r_map_ew
Illustration of a map of England and Wales in R using data on R(t) from LocalCovid19Tracker
OpenABM-Covid19
OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic
POPART-IBM
C code of the individual-based model developed as part of the HPTN071 (PopART) trial
como_command_line
Scripts to run the CoMo model as a basic R script and pair with various calibration approaches
context_matters
Code for the manuscript "Context Matters: using reinforcement learning to develop human-readable, state-dependent outbreak response policies"
covasim
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
fmd_realtime_decisionmaking
Code for manuscript "Real-time decision-making during emergency disease outbreaks"
OpenABM-Covid19-utilities
A bunch of helper scripts/functions for using with the OpenABM-Covid19 model
voting_systems
Vote-processing rules used in elections, here applied to output from epidemiological models. Defined rules are: first-past-the-post, Borda Count, Coombs Method, Alternative Vote.
p-robot's Repositories
p-robot/como_command_line
Scripts to run the CoMo model as a basic R script and pair with various calibration approaches
p-robot/voting_systems
Vote-processing rules used in elections, here applied to output from epidemiological models. Defined rules are: first-past-the-post, Borda Count, Coombs Method, Alternative Vote.
p-robot/aws_setup
p-robot/BU-COVID
BU-COVID project
p-robot/closing_gaps_arm_c
Closing gaps analysis for arm C communities
p-robot/como
CoMo COVID-19 App repository.
p-robot/como_egypt_analysis
p-robot/comoOdeCpp
Implements CoMo Consortium's COVID-19 transmission model in Rcpp.
p-robot/covid19_r_map_ew
Illustration of a map of England and Wales in R using data on R(t) from LocalCovid19Tracker
p-robot/covid19uk
p-robot/Elicitation-1
MMODS Elicitation 1: COVID-19 reopening strategies at the county level in the face of uncertainty
p-robot/fitode
general purpose ODE fitting tool in R
p-robot/german-nouns
A list of ~100,000 German nouns and their grammatical properties compiled from WiktionaryDE as CSV file. Plus a module to look up the data and parse compound words.
p-robot/gridworld
Reinforcement learning example, solving the gridworld problem
p-robot/inctools
Incidence Estimation Tools
p-robot/Individual-based-model-for-HIV-among-FSWs-and-their-clients
Code for the paper: "HIV incidence and impact of interventions among female sex workers and their clients in the Middle East and North Africa: Mathematical modelling analysis"
p-robot/JUNE
p-robot/last_mile
Analysis scripts for project 'Modelling to achieve the greatest and most durable reduction in HIV incidence in high burden settings'
p-robot/OpenABM-Covid19
p-robot/POPART-IBM
C code of the individual-based model developed as part of the HPTN071 (PopART) trial
p-robot/rl_mountain_car
Mountain car example of reinforcement learning
p-robot/scalene
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python
p-robot/sge
Snakemake profile for the (Sun) Grid Engine queueing system
p-robot/SM-ExpFam-LFI
Code for the paper: "Score Matched Conditional Exponential Families for Likelihood-Free Inference", https://jmlr.org/papers/v23/21-0061.html
p-robot/smart-fp
p-robot/smart-hiv
WHO SMART Guidelines Content Implemntation Guide for HIV
p-robot/smart-ig-empty
Empty IG for make new SMART Guidelines
p-robot/synthetic-contact-matrices
Updates to the synthetic contact matrices
p-robot/test_git
p-robot/voting_systems_epi_analysis
Applying vote processing rules to output from multiple epidemiological models