pablocarderam
Work with infectious disease, synthetic biology, evolution, epidemiology.
Ragon InstituteCambridge, MA
Pinned Repositories
BioPensum
Pensum dinámico de biologia y microbiologia en uniandes. Utiliza spreadsheet por medio de tabletop.js
evolution-immunity
An exploration of the effects of acquired immunity on pathogen evolution using Opqua.
fitness_valleys_opqua
Exploring pathogen evolution across fitness valleys using Opqua.
genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
labSquared
A laboratory laboratory.
Leukippos-SynBioAppSelector
An app that serves as an index of available software used in synthetic biology, categorizing them by function. Being developed by the team at the Leukippos Institute, http://leukippos.org. For more information, see: SynBio App Selector: an Application Selection Engine forSynthetic Biology. Pedro Fernandes, Gerd Moe-Behrens, Pablo Cárdenas, Sayane Shome, Alioune Ngom. figshare. http://dx.doi.org/10.6084/m9.figshare.743026 Retrieved 16:24, Aug 17, 2013 (GMT)
opqua
Epidemiological modeling framework for pathogen population genetics and evolution.
PhageModel
ODE model describing evolution of bacterial resistance to phages under different conditions. Work developed for CIMFU at UniAndes.
Plasmodium_Interactome
Interactive visualization webapp for protein interactions in Plasmodium.
Wadjet
Wadjet is a predictive model used to forecast the number of snakebites in each department of Colombia, as well as the antivenom doses needed to cover them, and their cost. It uses an ARIMAX model with rainfall data as covariant when possible and a seasonal model when no data is available. Wadjet uses data frm the Colombian Instituto Nacional de Salud's SIVIGILA program and the Instituto de Hidrología, Meteorología y Estudios Ambientales of Colombia. The analysis scripts are written in R, with a GUI coded in Java using SWT. The project was developed as a part of the Introduction to Biomedical Engineering course at Universidad de los Andes, 2015-1, with the help of Lucía Pérez Herrera, Camilo Pérez Martínez, Luisa Vargas Daza and Sara Nieto Díaz.
pablocarderam's Repositories
pablocarderam/opqua
Epidemiological modeling framework for pathogen population genetics and evolution.
pablocarderam/Leukippos-SynBioAppSelector
An app that serves as an index of available software used in synthetic biology, categorizing them by function. Being developed by the team at the Leukippos Institute, http://leukippos.org. For more information, see: SynBio App Selector: an Application Selection Engine forSynthetic Biology. Pedro Fernandes, Gerd Moe-Behrens, Pablo Cárdenas, Sayane Shome, Alioune Ngom. figshare. http://dx.doi.org/10.6084/m9.figshare.743026 Retrieved 16:24, Aug 17, 2013 (GMT)
pablocarderam/BioPensum
Pensum dinámico de biologia y microbiologia en uniandes. Utiliza spreadsheet por medio de tabletop.js
pablocarderam/evolution-immunity
An exploration of the effects of acquired immunity on pathogen evolution using Opqua.
pablocarderam/fitness_valleys_opqua
Exploring pathogen evolution across fitness valleys using Opqua.
pablocarderam/genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
pablocarderam/labSquared
A laboratory laboratory.
pablocarderam/PhageModel
ODE model describing evolution of bacterial resistance to phages under different conditions. Work developed for CIMFU at UniAndes.
pablocarderam/Wadjet
Wadjet is a predictive model used to forecast the number of snakebites in each department of Colombia, as well as the antivenom doses needed to cover them, and their cost. It uses an ARIMAX model with rainfall data as covariant when possible and a seasonal model when no data is available. Wadjet uses data frm the Colombian Instituto Nacional de Salud's SIVIGILA program and the Instituto de Hidrología, Meteorología y Estudios Ambientales of Colombia. The analysis scripts are written in R, with a GUI coded in Java using SWT. The project was developed as a part of the Introduction to Biomedical Engineering course at Universidad de los Andes, 2015-1, with the help of Lucía Pérez Herrera, Camilo Pérez Martínez, Luisa Vargas Daza and Sara Nieto Díaz.
pablocarderam/Plasmodium_Interactome
Interactive visualization webapp for protein interactions in Plasmodium.
pablocarderam/Arenera
This is now a game engine. js & html5. Awesomeness awaits.
pablocarderam/BacterialResistance
Antibiotic resistance and evolutionary game theory agent-based model. Final project for the Systems Biology, course given by Juan Manuel Pedraza, 2016-1. Pablo Cárdenas Ramírez, Juan Sebastián Andrade, Laura Milena Forero Junco, Andrea Velásquez
pablocarderam/bedl_jupyter_notebook_resources
pablocarderam/cedh_evolution
MTG cEDH ecology and evolution
pablocarderam/close-open
window.close()||window.open()===========================Un ensayo multimedia sobre el rol del arte en el mundo de la Web 2.0 y la Web semántica.Desarrollado por Pablo Cárdenas Ramírez para la clase de Nuevos Medios, 2015-1 dictada por Carmen Gil Vrolijk en la Universidad de los Andes.window.close()||window.open()===========================Un ensayo multimedia sobre el rol del arte en el mundo de la Web 2.0 y la Web semántica.Desarrollado por Pablo Cárdenas Ramírez para la clase de Nuevos Medios, 2015-1 dictada por Carmen Gil Vrolijk en la Universidad de los Andes.Un ensayo multimedia sobre el rol del arte en el mundo de la Web 2.0 y la Web semántica.Un ensayo multimedia sobre el rol del arte en el mundo de la web 2.0 y semántica.
pablocarderam/ColoMBINAS_ResistanceEvolution
Population Determinants of Pathogen Resistance to Treatment In Presence of Intra-host Competition
pablocarderam/CompetitiveLotkaVolterra
Simulates competitive Lotka-Volterra dynamics between two species using a fourth-order Runge-Kutta algorithm.
pablocarderam/CRISPR_Acquisition
Code for model in "CRISPR spacer acquisition is a rare event in human gut microbiome" by An-Ni Zhang et al.
pablocarderam/HAL_analysis
For Nakashima, et al.
pablocarderam/HookwormEnergyModel
Stochastic, intrahost model for hookworm infection by Ancylostoma duodenale. Designed for Basic Physics 2 course 2014-2 at Universidad de los Andes, prof. Ciaran Smyth. Developed by Pablo Cárdenas R., Maria Alejandra Galeano, Laura Mejía R. & Santiago Mesa.
pablocarderam/IRES_Supply_Network
An algorithm that optimizes a supply network by closing redundant nodes and distributing supplies according to demand at each remaining node. Potential application in medical supply distribution as well as commercial enterprises.
pablocarderam/Jack
...Siente los arcoiris...
pablocarderam/MalariaGuapi
Genomic analysis with UNAL, URosario, Sanger
pablocarderam/MuscleModel
Stochastic model of skeletal muscle force dynamics. Made from notes on Juan Manuel Cordovez’s Quantitative Physiology Icourse, 2015, semester 1, Universidad de los Andes
pablocarderam/pablocarderam.github.io
Github.io webpage to show some of my stuff.
pablocarderam/PetriPage
Simple evolution simulator
pablocarderam/pfal-transcriptional-control
Data and analysis code for transcriptional control in malaria parasites
pablocarderam/simbiosys
pablocarderam/var-genes
2.18 final project