pablormier
Scientist @ Institute for Computational Biomedicine (@saezlab), Heidelberg University and EMBL-EBI visitor.
Heidelberg UniversityGermany
Pinned Repositories
hipster
Hipster4j is a lightweight and powerful heuristic search library for Java and Android. It contains common, fully customizable algorithms such as Dijkstra, A* (A-Star), DFS, BFS, Bellman-Ford and more.
pyncov-19
Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19
dexom
Diversity-based enumeration of optimal context-specific metabolic networks
Deep-Learning-Papers-Reading-Roadmap
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
embedded-jetty-annotations-example
An embedded jetty template aplication example with support for Servlet 3.0 annotations, ready to deploy on Heroku
machine-learning-notebooks
Notes on Pattern Recognition and Machine Learning
parallel-loops
Simple & Lightweight library for Java to assist the creation of concurrent tasks and loop parallelization.
yabox
Yet another black-box optimization library for Python
liana-py
LIANA+: an all-in-one framework for cell-cell communication
scape
Single-cell Analysis of Perturbational Effects using Machine Learning
pablormier's Repositories
pablormier/yabox
Yet another black-box optimization library for Python
pablormier/kaggle-lish-moa-annotated
LISH-Harvard Mechanism of Action (MoA) Kaggle's dataset with annotations
pablormier/awesome-math
A curated list of awesome mathematics resources
pablormier/pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
pablormier/BNGPU
Scaling structural learning with NO-BEARS
pablormier/causalbench
pablormier/causality_perspective_2023
pablormier/cobra306
A small version of COBRA Toolbox 3.0.6 with no submodules
pablormier/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
pablormier/computation-thru-dynamics
Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.
pablormier/corneto-web
pablormier/covid-19
A collection of work related to COVID-19
pablormier/DGE_workshop
pablormier/DGE_workshop_salmon
pablormier/dslibro
Repositorio para el libro de ciencia de datos.
pablormier/HSE545
POSTECH ME Machine Learning, Prof. Seungchul Lee
pablormier/LEMBAS
enables genome-scale simulation of intracellular signaling
pablormier/liana-py
LIANA: a LIgand-receptor ANalysis frAmework
pablormier/mcmc-demo
Interactive Markov-chain Monte Carlo Javascript demos
pablormier/metabolomics-ORA
Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder et al. (manuscript in preparation)
pablormier/miom-gems
Lightweight versions of common genome scale metabolic models using miom format
pablormier/mkdocs-deploy-gh-pages
GitHub Action to deploy an MkDocs site to GitHub Pages
pablormier/omnipath-static
Omnipath static versions
pablormier/pablormier.github.io
Personal webpage
pablormier/PlotNeuralNet
Latex code for making neural networks diagrams
pablormier/RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curatiopn and analysis.
pablormier/resources
pablormier/scRNA-seq
pablormier/self-organising-systems
pablormier/tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data