pablormier

hipster

Hipster4j is a lightweight and powerful heuristic search library for Java and Android. It contains common, fully customizable algorithms such as Dijkstra, A* (A-Star), DFS, BFS, Bellman-Ford and more.

pyncov-19

Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19

dexom

Diversity-based enumeration of optimal context-specific metabolic networks

Deep-Learning-Papers-Reading-Roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

embedded-jetty-annotations-example

An embedded jetty template aplication example with support for Servlet 3.0 annotations, ready to deploy on Heroku

machine-learning-notebooks

Notes on Pattern Recognition and Machine Learning

parallel-loops

Simple & Lightweight library for Java to assist the creation of concurrent tasks and loop parallelization.

yabox

Yet another black-box optimization library for Python

liana-py

LIANA+: an all-in-one framework for cell-cell communication

scape

Single-cell Analysis of Perturbational Effects using Machine Learning

pablormier/yabox

Yet another black-box optimization library for Python

pablormier/kaggle-lish-moa-annotated

LISH-Harvard Mechanism of Action (MoA) Kaggle's dataset with annotations

pablormier/awesome-math

A curated list of awesome mathematics resources

pablormier/pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

pablormier/BNGPU

Scaling structural learning with NO-BEARS

pablormier/causalbench

pablormier/causality_perspective_2023

pablormier/cobra306

A small version of COBRA Toolbox 3.0.6 with no submodules

pablormier/cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

pablormier/computation-thru-dynamics

Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.

pablormier/corneto

CORNETO: an optimization library for modeling biological network inference problems

pablormier/corneto-web

pablormier/covid-19

A collection of work related to COVID-19

pablormier/DGE_workshop

pablormier/DGE_workshop_salmon

pablormier/dslibro

Repositorio para el libro de ciencia de datos.

pablormier/HSE545

POSTECH ME Machine Learning, Prof. Seungchul Lee

pablormier/LEMBAS

enables genome-scale simulation of intracellular signaling

pablormier/liana-py

LIANA: a LIgand-receptor ANalysis frAmework

pablormier/mcmc-demo

Interactive Markov-chain Monte Carlo Javascript demos

pablormier/metabolomics-ORA

Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder et al. (manuscript in preparation)

pablormier/miom-gems

Lightweight versions of common genome scale metabolic models using miom format

pablormier/mkdocs-deploy-gh-pages

GitHub Action to deploy an MkDocs site to GitHub Pages

pablormier/omnipath-static

Omnipath static versions

pablormier/pablormier.github.io

Personal webpage

pablormier/PlotNeuralNet

Latex code for making neural networks diagrams

pablormier/RAVEN

The RAVEN Toolbox for genome scale model reconstruction, curatiopn and analysis.

pablormier/resources

pablormier/scRNA-seq

pablormier/self-organising-systems