pascalhabluetzel
Molecular ecologist, evolutionary biologist, senior researcher at VLIZ.
Flanders Marine Institute - VLIZOstend
Pinned Repositories
grifo
GRIFO is an analysis pipeline for nanopore metabarcoding sequence data
CDS-miner
CDS-miner aligns a list of query CDS in fasta format to a genome assembly in order to retrieve similar CDS above a specific threshold. Results are stored in fasta format. It works for eukaryote genomes with intron-exon structure.
gbif_playground
Some isolated scripts that might be useful when dealing with GBIF data
Stickleback-parasites-2016
GEANS_WP4_dwca
This repository has example data and code to produce occurrence and ASV tables from Illumina metabarcoding data using DADA2.
metaVaR
R package for reference-free and metagenomic-based population genomic analysis
Type_localities_Bolivian_fishes
This is a list of type localities of all nominal taxa of fishes within the borders of Bolivia. Geographic coordinates are sourced from the literature or, if not available, georeferenced using a standardized procedure.
useful_short_scripts
A collection of short scripts that do useful stuff for bioinformatics and biodiversity informatics.
larvae-and-sound
oyster-larvae-settlement-cue-interactions
pascalhabluetzel's Repositories
pascalhabluetzel/Type_localities_Bolivian_fishes
This is a list of type localities of all nominal taxa of fishes within the borders of Bolivia. Geographic coordinates are sourced from the literature or, if not available, georeferenced using a standardized procedure.
pascalhabluetzel/grifo
GRIFO is an analysis pipeline for nanopore metabarcoding sequence data
pascalhabluetzel/Stickleback-parasites-2016
pascalhabluetzel/GEANS_WP4_dwca
This repository has example data and code to produce occurrence and ASV tables from Illumina metabarcoding data using DADA2.
pascalhabluetzel/CDS-miner
CDS-miner aligns a list of query CDS in fasta format to a genome assembly in order to retrieve similar CDS above a specific threshold. Results are stored in fasta format. It works for eukaryote genomes with intron-exon structure.
pascalhabluetzel/gbif_playground
Some isolated scripts that might be useful when dealing with GBIF data
pascalhabluetzel/useful_short_scripts
A collection of short scripts that do useful stuff for bioinformatics and biodiversity informatics.
pascalhabluetzel/metaVaR
R package for reference-free and metagenomic-based population genomic analysis