pascalhabluetzel
Molecular ecologist, evolutionary biologist, senior researcher at VLIZ.
Flanders Marine Institute - VLIZOstend
pascalhabluetzel's Stars
Otoliths/rFishTaxa
R Interface to 'Eschmeyer's Catalog of Fishes'
Enorya/Phylo-tree_eDNA
Script to create phylogenetic trees based on taxonomic assignments of Environmental DNA (eDNA) data
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
wdecoster/NanoPlot
Plotting scripts for long read sequencing data
gbif/metabarcoding-data-toolkit-ui
Frontend for the eDNA tool
jolespin/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
moshi4/pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
facebookresearch/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
andrewcparnell/bhm_course
Course notes, worksheets, and timetable for Bayesian Hierarchical Modelling course
oliviergimenez/multistate_occupancy
Code to fit a multistate occupancy model with uncertainty in Jags
jhines/R2esurge
R interface for E-SURGE
rodriguez-ezpeleta/NEA_fish_DB
GiuliaMaiello/Metaprobe-2.0
The Metaprobe: a nimble, low-cost environmental DNA sampler for upscaling marine communities monitoring
hasindu2008/slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
althonos/rich-msa
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
iobis/PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
stamatak/standard-RAxML
jorvis/biocode
Bioinformatics code libraries and scripts
gpertea/gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
fethalen/Patchwork
Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data