pascualgroup/varmodel2

Issues

• Transition times for other infections not updated on clearance?

  #36 opened a year ago by edbaskerville
  1

• Add gene and strain counts to summary table

  #35 opened a year ago by edbaskerville
  0

• modify the immune loss rate

  #34 opened 3 years ago by heqixin
  0

• Sampling frequency of duration of infection

  #32 opened 6 years ago by shainova
  0

• Switching scenarios at checkpoint

  #31 opened 6 years ago by shainova
  0

• Migration: regional vs. local intervention

  #30 opened 6 years ago by shainova
  0

• Migration with interventions

  #29 opened 6 years ago by shainova
  0

• Simulations with 1 population

  #28 opened 6 years ago by shainova
  1

• Fixing tables to handle multiple populations

  #27 opened 6 years ago by shainova
  1

• Pool as a metapopulation

  #26 opened 6 years ago by shainova
  5

• getting EIR

  #21 opened 7 years ago by shainova
  0

• Error in event timing

  #25 opened 7 years ago by shainova
  5

• Random seed in parameter files

  #23 opened 7 years ago by shainova
  1

• Error in allele_ref

  #24 opened 7 years ago by shainova
  1

• Implementing MDA

  #18 opened 7 years ago by shainova
  0

• Model fails running after restoring from checkpoint

  #14 opened 7 years ago by shainova
  1

• Failure when loading a checkpoint

  #22 opened 7 years ago by shainova
  0

• Implementing seasonality

  #17 opened 7 years ago by shainova
  0

• IRS implementation

  #19 opened 7 years ago by shainova
  0

• update rates

  #20 opened 7 years ago by heqixin
  2

• question on implementing interventions and seasonality

  #12 opened 7 years ago by shainova
  1

• Model does not run on Linux?

  #13 opened 7 years ago by shainova
  17

• A paradox using checkpoints???

  #15 opened 7 years ago by shainova
  5

• Specify multiple times for checkpoints

  #16 opened 7 years ago by shainova
  3

• Question: can source and destination host be the same?

  #7 opened 7 years ago by edbaskerville
  1

• question

  #11 opened 7 years ago by heqixin
  1

• Question on versions, and some functions

  #10 opened 7 years ago by heqixin
  1

• New genes can be used as "old genes" in generate_random_strain

  #9 opened 7 years ago by edbaskerville
  1

• Source strains should not include liver stage

  #8 opened 7 years ago by edbaskerville
  1

• Re-introduce new gene creation during immigration

  #5 opened 7 years ago by edbaskerville
  1

• Need to add "source" field for genes

  #2 opened 7 years ago by edbaskerville
  4

• Make it so recombination rate is non-zero

  #6 opened 7 years ago by edbaskerville
  1

• Random seed adjustments

  #4 opened 7 years ago by edbaskerville
  1

• Segfaults under general immunity and neutrality tests

  #1 opened 7 years ago by edbaskerville
  2

• runtest error on midway

  #3 opened 7 years ago by heqixin
  8