paulbrodersen
Computational neuroscientist/applied mathematician/software developer working on biologically plausible variants of artificial neural networks.
University of OxfordOxford, UK
Pinned Repositories
entropy_based_binning
Entropy based binning of discrete variables.
entropy_estimators
Estimators for the entropy and other information theoretic quantities of continuous distributions
inverse_distance_weighting
Interpolation in D-dimensional spaces using inverse distance weighted, k-nearest neighbours
matplotlib_set_diagrams
Draw Euler diagrams and Venn diagrams with Matplotlib.
matplotlib_venn_wordcloud
Venn diagrams with word clouds
netgraph
Publication-quality network visualisations in python
network_line_graph
Visualisation to compare different states of a network
slicereg
Registration of 2D sections to a 3D volume
somnotate
Automated polysomnography for experimental animal research
vizout
Python module that provides a graphical interface to select outliers in high dimensional data sets interactively. Built on seaborn.
paulbrodersen's Repositories
paulbrodersen/netgraph
Publication-quality network visualisations in python
paulbrodersen/entropy_estimators
Estimators for the entropy and other information theoretic quantities of continuous distributions
paulbrodersen/inverse_distance_weighting
Interpolation in D-dimensional spaces using inverse distance weighted, k-nearest neighbours
paulbrodersen/matplotlib_venn_wordcloud
Venn diagrams with word clouds
paulbrodersen/entropy_based_binning
Entropy based binning of discrete variables.
paulbrodersen/somnotate
Automated polysomnography for experimental animal research
paulbrodersen/network_line_graph
Visualisation to compare different states of a network
paulbrodersen/matplotlib_set_diagrams
Draw Euler diagrams and Venn diagrams with Matplotlib.
paulbrodersen/slicereg
Registration of 2D sections to a 3D volume
paulbrodersen/brainglobe.github.io
brainglobe.info website
paulbrodersen/BrainRender
a python based software for visualization of neuroanatomical and morphological data.
paulbrodersen/cgat-core
Core functionality of the CGAT code
paulbrodersen/coronal_hemisphere_annotation_tool
paulbrodersen/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
paulbrodersen/grandalf
graph and drawing algorithms framework
paulbrodersen/hola
Human-like Orthogonal Layout Algorithm
paulbrodersen/initium_map
paulbrodersen/lspopt
Python implementation of a multitaper window method for estimating Wigner spectra for certain locally stationary processes
paulbrodersen/matplotlib-venn
Area-weighted venn-diagrams for Python/matplotlib
paulbrodersen/networkx
Network Analysis in Python
paulbrodersen/neuronab
A python module that automatically isolates neurites and potential synapses on immunofluorescence images.
paulbrodersen/nutil
https://nutil.readthedocs.io/en/latest/
paulbrodersen/patchseq
paulbrodersen/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
paulbrodersen/rbm_variants
Restricted Boltzmann machine variants
paulbrodersen/sleepy-python
Automated vigilance state scoring based on LFP or EEG data
paulbrodersen/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
paulbrodersen/The-Python-Graph-Gallery
A website displaying hundreds of charts made with Python
paulbrodersen/vedo
A python module for scientific analysis of 3D data based on VTK and Numpy
paulbrodersen/visbrain
A multi-purpose GPU-accelerated open-source suite for brain data visualization