paulmthompson

MITCambridge, MA

Pinned Repositories

BaslerCamera.jl
Language:Julia1 3 10
brainrender-docker
Language:Dockerfile2 1 00
CameraViewer
QT viewer for viewing and saving from an arbitrary number of Basler Cameras
Language:C++1 3 30
ffmpeg_wrapper
Convenience functions in c++ for using ffmpeg libraries.
Language:C++2 3 101
Intan.jl
Julia API for Intan RHD2000
Language:Julia10 5 176
JNeuron
Simple single neuron simulations in Julia
Language:Julia10 7 214
Spikes.jl
Data analysis for electrophysiology in Julia
Language:Julia4 3 33
SpikeSorting.jl
Online spike sorting methods in Julia
Language:Julia12 7 109
StackedHourglass.jl
Language:Julia1 3 70
WhiskerTracking.jl
Language:Julia2 3 71

paulmthompson's Repositories

paulmthompson/SpikeSorting.jl
Online spike sorting methods in Julia
Language:Julia12 7 109
paulmthompson/Intan.jl
Julia API for Intan RHD2000
Language:Julia10 5 176
paulmthompson/ffmpeg_wrapper
Convenience functions in c++ for using ffmpeg libraries.
Language:C++2 3 101
paulmthompson/WhiskerTracking.jl
Language:Julia2 3 71
paulmthompson/CameraViewer
QT viewer for viewing and saving from an arbitrary number of Basler Cameras
Language:C++1 3 30
paulmthompson/spikesorter
Language:C++1
paulmthompson/WhiskerToolbox
Language:C++1 3 111
paulmthompson/basler-camera-terminator
3 2
paulmthompson/CameraManager
Language:C++3 4
paulmthompson/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Language:Python1 0
paulmthompson/ephys
Language:Python
paulmthompson/Hourglass
Language:C++3 7
paulmthompson/intan-headstages
modern c++ files for using RHD and RHD headstages from Intan
Language:C++3 0
paulmthompson/Intan-RHX
Intan RHX is free, powerful data acquisition software that displays and records electrophysiological signals from any Intan RHD or RHS system using an RHD USB interface board, RHD recording controller, or RHS stim/recording controller
Language:C++1 0
paulmthompson/keras-unet-collection
The Tensorflow, Keras implementation of U-net, V-net, U-net++, UNET 3+, Attention U-net, R2U-net, ResUnet-a, U^2-Net, TransUNET, and Swin-UNET with optional ImageNet-trained backbones.
Language:Python
paulmthompson/Kilosort
Fast spike sorting with drift correction for up to a thousand channels
Language:MATLAB2 0
paulmthompson/Lick-Detector
This is a respository for an open source lick detector
Language:C++3 3
paulmthompson/neural-recording-controller
Language:C++3 2
paulmthompson/neuro-fpga
Language:Verilog3 4
paulmthompson/paulmthompson.github.io
Language:HTML
paulmthompson/phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
Language:Python2 0
paulmthompson/protocols
2 0
paulmthompson/pytorch-stacked-hourglass
A PyTorch toolkit for 2D Human Pose Estimation.
Language:Python1 0
paulmthompson/silicon-probes
Language:Jupyter Notebook3 0
paulmthompson/spikesorting_fullpursuit
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
Language:Python2 0
paulmthompson/TeraStitcher
A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
Language:C++1 0
paulmthompson/whacc
semi-automatic and customizable pipeline for classifying whiskers contacting objects. WhACC uses a ResNetV2-Light GBM hybrid model to predict touch times in high-speed video. Included is a tracker to extract images from video, a GUI to label extracted data, and a retrain interface to customize the light GBM model head to your data.
Language:Python
paulmthompson/Whisker-Analysis
Language:C++2 0
paulmthompson/WhiskerTask
Language:Julia3 0
paulmthompson/WhiskerTrackingGtk.jl
GUI interface in Julia for WhiskerTracking.jl
Language:Julia3 2