Pinned Repositories
BaslerCamera.jl
brainrender-docker
CameraViewer
QT viewer for viewing and saving from an arbitrary number of Basler Cameras
ffmpeg_wrapper
Convenience functions in c++ for using ffmpeg libraries.
Intan.jl
Julia API for Intan RHD2000
JNeuron
Simple single neuron simulations in Julia
Spikes.jl
Data analysis for electrophysiology in Julia
SpikeSorting.jl
Online spike sorting methods in Julia
StackedHourglass.jl
WhiskerTracking.jl
paulmthompson's Repositories
paulmthompson/SpikeSorting.jl
Online spike sorting methods in Julia
paulmthompson/Intan.jl
Julia API for Intan RHD2000
paulmthompson/ffmpeg_wrapper
Convenience functions in c++ for using ffmpeg libraries.
paulmthompson/WhiskerTracking.jl
paulmthompson/CameraViewer
QT viewer for viewing and saving from an arbitrary number of Basler Cameras
paulmthompson/spikesorter
paulmthompson/WhiskerToolbox
paulmthompson/basler-camera-terminator
paulmthompson/CameraManager
paulmthompson/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
paulmthompson/ephys
paulmthompson/Hourglass
paulmthompson/intan-headstages
modern c++ files for using RHD and RHD headstages from Intan
paulmthompson/Intan-RHX
Intan RHX is free, powerful data acquisition software that displays and records electrophysiological signals from any Intan RHD or RHS system using an RHD USB interface board, RHD recording controller, or RHS stim/recording controller
paulmthompson/keras-unet-collection
The Tensorflow, Keras implementation of U-net, V-net, U-net++, UNET 3+, Attention U-net, R2U-net, ResUnet-a, U^2-Net, TransUNET, and Swin-UNET with optional ImageNet-trained backbones.
paulmthompson/Kilosort
Fast spike sorting with drift correction for up to a thousand channels
paulmthompson/Lick-Detector
This is a respository for an open source lick detector
paulmthompson/neural-recording-controller
paulmthompson/neuro-fpga
paulmthompson/paulmthompson.github.io
paulmthompson/phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
paulmthompson/protocols
paulmthompson/pytorch-stacked-hourglass
A PyTorch toolkit for 2D Human Pose Estimation.
paulmthompson/silicon-probes
paulmthompson/spikesorting_fullpursuit
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
paulmthompson/TeraStitcher
A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
paulmthompson/whacc
semi-automatic and customizable pipeline for classifying whiskers contacting objects. WhACC uses a ResNetV2-Light GBM hybrid model to predict touch times in high-speed video. Included is a tracker to extract images from video, a GUI to label extracted data, and a retrain interface to customize the light GBM model head to your data.
paulmthompson/Whisker-Analysis
paulmthompson/WhiskerTask
paulmthompson/WhiskerTrackingGtk.jl
GUI interface in Julia for WhiskerTracking.jl