/POMAcounts

:apple: Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data

Primary LanguageR

Welcome to POMAcounts!

Lifecycle:stable Last Commit License: GPL v3

Overview

POMAcounts is a web-based tool for exploratory data analysis and statistical analysis of mass spectrometry spectral counts data. This GUI is based on the R/Bioconductor packages msmsEDA (Gregori et al., 2020a) and msmsTests (Gregori et al., 2020b). The name of POMAcounts is given by the large similarity of both the front-end and the back-end that it shares with POMAShiny web application. POMAcounts is hosted at http://webapps.nutrimetabolomics.com/POMAcounts.

Run POMAcounts locally

Step 1: Clone this repository

Open the terminal and run:

git clone "https://github.com/pcastellanoescuder/POMAcounts.git"

Step 2: Install package dependencies

Open the POMAcounts.Rproj with RStudio and run the package_installation.R script.

Step 3: Deploy POMAcounts locally

Once all dependencies have been installed run the following command and enjoy the analysis!

shiny::runApp()

Code of Conduct

Please note that the POMAcounts project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.