Pinned Repositories
220408_PN0305_ECFC_BMP9_Jess
This is the repo for the reanalysis of the bulk RNAseq data of the BMP9 treated ECFCs in 3D.
230530_brainage
Repository for the analysis of brainage from BrainageR estimates.
240326_lanni_proteomic_mice_CSF
repository for the analysis of the proteomic dataset produced by Prof. Lanni
240517_PN0557_BMP9_shear_stress
Repository for the analysis of the dataset with ECFCs treated with BMP9 or vehicle and shear stress
cell_proliferation_longitudinal_study
automatic system to measure the proliferation of the cell (longitudinal study) in a 384 well plate
House_Keeping_genes_identification
IC50
pipeline-vessel-analysis
the aim of the pipeline is to automate the detection of the vessel and extract information.
THP-1_polarization
workflow to produce the report of the polarization of THP-1 shRNASET2
tube_assay_formation_analysis
extract and analyze relevant information from tube formation assay images (epi-fluorescent microscopy)
pedriniedoardo's Repositories
pedriniedoardo/IC50
pedriniedoardo/pipeline-vessel-analysis
the aim of the pipeline is to automate the detection of the vessel and extract information.
pedriniedoardo/tube_assay_formation_analysis
extract and analyze relevant information from tube formation assay images (epi-fluorescent microscopy)
pedriniedoardo/220408_PN0305_ECFC_BMP9_Jess
This is the repo for the reanalysis of the bulk RNAseq data of the BMP9 treated ECFCs in 3D.
pedriniedoardo/230530_brainage
Repository for the analysis of brainage from BrainageR estimates.
pedriniedoardo/240326_lanni_proteomic_mice_CSF
repository for the analysis of the proteomic dataset produced by Prof. Lanni
pedriniedoardo/240517_PN0557_BMP9_shear_stress
Repository for the analysis of the dataset with ECFCs treated with BMP9 or vehicle and shear stress
pedriniedoardo/ascend
R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)
pedriniedoardo/ascend-1
Analysis of Single Cell Expression, Normalization and Differential expression
pedriniedoardo/240522_clustering_MS_imaging
Repository for the collaborative work on MS imaging analysis
pedriniedoardo/240906_lanni_circadian
repo for the sample analysis of the circadian expression genes in mice
pedriniedoardo/240930_adeena_mouse_behaviour
Repo containing the analysis of a behavioural study conducted on mice
pedriniedoardo/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
pedriniedoardo/BS_run_04
Repository for the analysis fo the Brain Speheres dataset, run 04
pedriniedoardo/Early-aging-of-chronic-active-multiple-sclerosis-brains
Repository for code used in the manuscript
pedriniedoardo/GSVA
perform_GSVA
pedriniedoardo/IPA4LSx
ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX
pedriniedoardo/merfish_sample_R
sample script to load and explore merfish dataset
pedriniedoardo/Proportion_analysis_sc_tools
repository containing test for some tools used to run aboundance or proportion analysis on sc datasets
pedriniedoardo/query_transcription_factor_db
example of how to perform a query to TRANSFAC and JSPAR from R
pedriniedoardo/retinal_vascular_image_analysis
macro used to perform image analysis of the retina
pedriniedoardo/scread-protocol
pedriniedoardo/Seurat_V5_routines
This is a repo containing the main routines used to process sc datasets with Seurat V5
pedriniedoardo/ST_visium_routines
repository for routines used to process and analyze ST dataset using visium technology
pedriniedoardo/test_liana
this repository contains the script and test for analyzing CCC using the LIANA package https://saezlab.github.io/liana/
pedriniedoardo/test_MOFA
repository with testing some functionality of MOFA https://biofam.github.io/MOFA2/
pedriniedoardo/test_raptor
repository for test-script for running RAPToR https://www.nature.com/articles/s41592-022-01540-0
pedriniedoardo/test_SingleR
repo for sample scripts for the implementation of the different functionalities available from SingleR http://bioconductor.org/books/release/SingleRBook/introduction.html
pedriniedoardo/TEtranscripts
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
pedriniedoardo/tool_testing_clusterHSR
repo for the sample script used for testing packages