Pinned Repositories
220408_PN0305_ECFC_BMP9_Jess
This is the repo for the reanalysis of the bulk RNAseq data of the BMP9 treated ECFCs in 3D.
230530_brainage
Repository for the analysis of brainage from BrainageR estimates.
240326_lanni_proteomic_mice_CSF
repository for the analysis of the proteomic dataset produced by Prof. Lanni
240517_PN0557_BMP9_shear_stress
Repository for the analysis of the dataset with ECFCs treated with BMP9 or vehicle and shear stress
cell_proliferation_longitudinal_study
automatic system to measure the proliferation of the cell (longitudinal study) in a 384 well plate
House_Keeping_genes_identification
IC50
pipeline-vessel-analysis
the aim of the pipeline is to automate the detection of the vessel and extract information.
THP-1_polarization
workflow to produce the report of the polarization of THP-1 shRNASET2
tube_assay_formation_analysis
extract and analyze relevant information from tube formation assay images (epi-fluorescent microscopy)
pedriniedoardo's Repositories
pedriniedoardo/GSVA
perform_GSVA
pedriniedoardo/query_transcription_factor_db
example of how to perform a query to TRANSFAC and JSPAR from R
pedriniedoardo/pipeline-vessel-analysis
the aim of the pipeline is to automate the detection of the vessel and extract information.
pedriniedoardo/House_Keeping_genes_identification
pedriniedoardo/THP-1_polarization
workflow to produce the report of the polarization of THP-1 shRNASET2
pedriniedoardo/cell_proliferation_longitudinal_study
automatic system to measure the proliferation of the cell (longitudinal study) in a 384 well plate
pedriniedoardo/single_cell_analysis
step followed to analyze the single cell qPCR data from Biomark, without singular analysis toolset
pedriniedoardo/fluorescence-simulator
A simple ImageJ plugin to simulate blur and noise from fluorescence imaging
pedriniedoardo/TCGA_analysis_stage_vs_expression
the code match the staging of the tumor with the expression data for a gene of interest and perform an ANOVA in order to identify statistically significant differeces
pedriniedoardo/fix_dataframe_fluidigm_toolset
take care of the technical replicate in the dataframe and allow to be accepted by the singular analysis toolset
pedriniedoardo/ARIA
Retinal vessel analysis software for MATLAB