perslab/CELLECT

Check GWAS input

pascaltimshel opened this issue · 1 comments

pascaltimshel commented

Check for GWAS input:

  • file(s) exist(s)
  • correct formated (columns, data types etc)
  • possibly other factors

Make explicit error/warning if input is not compatible with LDSC / MAGMA

liubovpashkova commented
  • Snakemake itself checks for missing input files and throws very descriptive errors if there are missing ones.
  • Columns check added for both LDSC and MAGMA (see WiKi).