Issues
- 0
rule compute LD scores: numpy issue when running on a singularity image
#95 opened by ElizabethWallace97 - 1
GWAS hg38 coordinate
#89 opened by zhangpicb - 1
Error in run cellect-ldsc.snakefile
#93 opened by ElizabethWallace97 - 0
attributeerror
#92 opened by inabro - 1
KeyError: u"None of [Int64Index
#85 opened by wanghf0501 - 1
error when run cellect-ldsc.snakefile
#90 opened by frucelee - 0
- 3
Error in rule compute_LD_scores_all_genes:
#73 opened by yuGithuuub - 1
Bug when running mtag_munge.py
#88 opened by HouyuZhang - 2
error using cellex esmu files
#72 opened by JonnyBaseball - 3
Error in run cellect-ldsc.snakefile
#87 opened by jjzixue - 2
- 1
:wq
#84 opened by wanghf0501 - 1
Allowed characters in annotation names/id
#83 opened by pascaltimshel - 1
Error in git clone
#80 opened by grimwoo - 1
- 1
error: munge_ldsc installation in Windows 10
#79 opened by grimwoo - 4
Issue with dependencies?
#78 opened by Hannahglover - 0
Compute Enrichment score
#77 opened by pascaltimshel - 1
Offline-mode available?
#74 opened by demodw - 2
MissingOutputException
#75 opened by pvtodorov - 0
Exclude MHC doesn't apply to CELLECT-GENES
#70 opened by Tobi1kenobi - 2
Error Message when running - munge_sumstats.py
#69 opened by ckrilow - 3
Rule 'rule: # split_LD_scores' Breaks
#68 opened by ckrilow - 2
MissingOutputException in line 201 of ~/projects/CELLECT/cellect-ldsc.snakefile
#67 opened by ckrilow - 4
[BUG]: MissingOutputException in line 200 of /home/wbone/CELLECT/cellect-ldsc.snakefile: CELLECT-LDSC/precomputation/bed/genes_plus_100kb.1.bed not generated
#66 opened by wpbone06 - 0
- 0
- 21
Python conflict
#62 opened by DaianeH - 1
- 0
- 0
- 4
Distance of genes assigned to GWAS variants
#59 opened by DaianeH - 0
Remove example/config.yml
#58 opened by pascaltimshel - 22
Exporting genes assigned to GWAS variants
#53 opened by DaianeH - 3
Point file error
#57 opened by verdurin - 1
- 0
Munged sample sizes not equal to input
#55 opened by rrydbirk - 7
ValueError: Index gene invalid
#54 opened by rrydbirk - 7
ERROR converting summary statistics
#50 opened by satzel - 1
- 2
WINDOW_LD_BASED analysis error
#49 opened by fadista - 0
- 2
No SNP rsID column in GWAS dataset
#46 opened by AnjaMJ - 1
Check GWAS input
#47 opened by pascaltimshel - 2
Tabula Muris dataset
#48 opened by fadista - 26
- 3
Does not work with precomputed MOCA data
#42 opened by lamdan2 - 0
- 6
Error in rule compute_LD_scores:
#43 opened by willrosenow