GWAS hg38 coordinate
Opened this issue · 1 comments
zhangpicb commented
Dear @pdworzynski @pascaltimshel @tunepers @dylanmr @pvtodorov
Thanks for the great tool!
I want to use CELLECT for hg38 GWAS data. Which parameters need to be changes?
It would be appreciated if any messages could be provided.
Thanks in advanced!
Best,
zhang
ElizabethWallace97 commented
I am afraid I am running into an issue with this, as my data is also hg38 but when run with the 1000G data it ends up with incorrect bed files that have missing ensembl IDs and it causes the LDSC to fail