/vcfProcess

Variant Call Format to CSV and FASTA with filtering of SNPs and INDELs and identification of mixed infection

Primary LanguageRMIT LicenseMIT

Variant Call Format to CSV and FASTA with filtering of SNPs and INDELs and identification of mixed infection

regions2exclude.csv is an example file with H37Rv reference coordinates for repeat regions and PE/PPE and common AMR determining genes.