Bioinformatics Sequence Convertor
Introduction
This package is a library to enable the handling of sequence standard formats through Biojava: Genbank, Embl, Uniprot and Fasta sequence formats.
The major purpose of the package targets the instantiation of annotated sequence objects ready to be displayed in viewers available from Bioinformatics UI library.
Requirements
Use a Java Virtual Machine 1.7 (or above) from Oracle.
Not tested with any other JVM providers but Oracle... so there is no guarantee that the software will work as expected if not using Oracle's JVM.
Library uses
Since this package is a library, its primary purpose targets a use within other softwares.
JUint test classes can actually be reviewed to see how to prepare DSequence and FeatureTable objects to be used in viewers available from Bioinformatics UI library:
: see how to read EMBL sequence format
: see how to read Genbank sequence format
: see how to read Uniprot sequence format
License and dependencies
Bioinformatics SeqVertor API itself is released under the GNU Affero General Public License, Version 3.0. AGPL
It depends on several thrid-party libraries as stated in the NOTICE.txt file provided with this project.
-- (c) 2006-2017 - Patrick G. Durand