pha4ge/hAMRonization

Add parser: Mykrobe

fmaguire opened this issue · 3 comments

fmaguire commented
Add parser: Mykrobe
fmaguire commented

Assigned to @awitney (although I don't seem able to officially assign the issue as @awitney isn't a member of @pha4ge/wg-data_structures yet)

fmaguire commented

Deferring this to when we have a mutational/variant AMR specification.

awitney commented

Yes, sorry i had a look at this and remembered that its more variant based. Although for Staph sequences i think it does identify the presence of some resistance genes. Probably better to wait for a mutation aware spec though