Pinned Repositories
cameo
cameo - computer aided metabolic engineering & optimization
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
memote
memote – the genome-scale metabolic model test suite
optlang
optlang - sympy based mathematical programming language
swiglpk
Simple swig bindings for the GNU Linear Programming Kit
BICBpy
Bioinformatics and Computational Biology with Python
e-coli-core
fbaproject
Flux Balance Analysis using the GNU Linear Programming Kit (GLPK)
GurobiML
GurobiML provide a MathLink interface to Gurobi's LP/MIP solvers
phantomas1234's Repositories
phantomas1234/BICBpy
Bioinformatics and Computational Biology with Python
phantomas1234/fbaproject
Flux Balance Analysis using the GNU Linear Programming Kit (GLPK)
phantomas1234/neosproject
Python utilities for the Neos optimization server
phantomas1234/mEngine
phantomas1234/cobrapy
COBRApy is a package for constraint-based modeling of biological networks
phantomas1234/cobratoolbox
COnstraints Based Reconstruction and Analysis toolbox for MATLAB
phantomas1234/component-contribution
Standard reaction Gibbs energy estimation for biochemical reactions
phantomas1234/d3
A JavaScript visualization library for HTML and SVG.
phantomas1234/d3play
A sandbox for biological visualizations using d3 and other web technologies
phantomas1234/decaf-frontend
phantomas1234/escher
(formely visbio) Visualizations for systems biology.
phantomas1234/fabric
Simple, Pythonic remote execution and deployment.
phantomas1234/failed_models
A repository of reconstructions which I cannot parse and solve
phantomas1234/homebrew
:beer: The missing package manager for OS X.
phantomas1234/inspyred
phantomas1234/IProgress
Fork of http://code.google.com/p/python-progressbar/ with IPython notebook support
phantomas1234/m_model_collection
A collection of M models downloaded from published studies
phantomas1234/MASS-Models
A collection of MASS Toolbox models
phantomas1234/MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
phantomas1234/Numberjack
Python Combinatorial Optimisation Platform
phantomas1234/octopress
Octopress is an obsessively designed framework for Jekyll blogging. It’s easy to configure and easy to deploy. Sweet huh?
phantomas1234/ome
The OME Framework
phantomas1234/optlang
optlang - sympy based mathematical programming language
phantomas1234/pyorganism
a unified framework for analysing organisational principles in living organisms
phantomas1234/python-appveyor-demo
Demo project for building Python wheels with appveyor.com
phantomas1234/python-progressbar
Clone of python-progressbar
phantomas1234/raw2folders
CLI script for converting raw files into a folder structure.
phantomas1234/reveal.js
The HTML Presentation Framework
phantomas1234/The-Personal-Page
This simple one-page website is a way for people to have a very quick and easy personable website that aggregates your activity and positions a simple logo, a portrait and some description text in a nicely-formatted manner. This is licensed under the MIT and GPL licenses.
phantomas1234/UKRSE.github.io
Website for the UK Society of Research Software Engineers